* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MALDIrppa’ ...
** this is package ‘MALDIrppa’ version ‘1.1.0-2’
** package ‘MALDIrppa’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘MALDIrppa’
    finding HTML links ... done
    MALDIrppa-package                       html  
Rd warning: MALDIrppa-package.Rd:9: missing link ‘MALDIquant’
    addMetadata                             html  
Rd warning: addMetadata.Rd:8: missing link ‘AbstractMassObject-class’
Rd warning: addMetadata.Rd:16: missing link ‘AbstractMassObject-class’
Rd warning: addMetadata.Rd:27: missing link ‘AbstractMassObject-class’
    alignPeaks                              html  
Rd warning: alignPeaks.Rd:8: missing link ‘MassPeaks’
Rd warning: alignPeaks.Rd:8: missing link ‘MALDIquant’
Rd warning: alignPeaks.Rd:16: missing link ‘MassPeaks’
Rd warning: alignPeaks.Rd:19: missing link ‘referencePeaks’
Rd warning: alignPeaks.Rd:22: missing link ‘referencePeaks’
Rd warning: alignPeaks.Rd:22: missing link ‘binPeaks’
Rd warning: alignPeaks.Rd:24: missing link ‘MALDIquant’
Rd warning: alignPeaks.Rd:28: missing link ‘warpMassPeaks’
Rd warning: alignPeaks.Rd:28: missing link ‘binPeaks’
Rd warning: alignPeaks.Rd:28: missing link ‘MALDIquant’
Rd warning: alignPeaks.Rd:31: missing link ‘MassPeaks’
    countPeaks                              html  
Rd warning: countPeaks.Rd:8: missing link ‘MassPeaks’
Rd warning: countPeaks.Rd:16: missing link ‘MassPeaks’
    deletePeaks                             html  
    detectOutliers                          html  
Rd warning: detectOutliers.Rd:14: missing link ‘MassSpectrum’
Rd warning: detectOutliers.Rd:20: missing link ‘covMcd’
    importSpectra                           html  
Rd warning: importSpectra.Rd:7: missing link ‘MassSpectrum’
Rd warning: importSpectra.Rd:19: missing link ‘MassSpectrum’
Rd warning: importSpectra.Rd:22: missing link ‘MassSpectrum’
    peakPatterns                            html  
Rd warning: peakPatterns.Rd:8: missing link ‘intensityMatrix’
Rd warning: peakPatterns.Rd:20: missing link ‘MassPeaks’
Rd warning: peakPatterns.Rd:61: missing link ‘intensityMatrix’
    plot.scSpectra                          html  
    rawToPeaks                              html  
Rd warning: rawToPeaks.Rd:5: missing link ‘MassPeaks’
Rd warning: rawToPeaks.Rd:8: missing link ‘MassPeaks’
Rd warning: rawToPeaks.Rd:23: missing link ‘MassPeaks’
Rd warning: rawToPeaks.Rd:26: missing link ‘MassPeaks’
    rawToSpectra                            html  
Rd warning: rawToSpectra.Rd:5: missing link ‘MassSpectrum’
Rd warning: rawToSpectra.Rd:8: missing link ‘MassSpectrum’
Rd warning: rawToSpectra.Rd:23: missing link ‘MassSpectrum’
Rd warning: rawToSpectra.Rd:26: missing link ‘MassSpectrum’
    redResolution                           html  
Rd warning: redResolution.Rd:8: missing link ‘MassSpectrum-class’
Rd warning: redResolution.Rd:15: missing link ‘MassSpectrum-class’
Rd warning: redResolution.Rd:26: missing link ‘MassSpectrum-class’
    screenSpectra                           html  
Rd warning: screenSpectra.Rd:18: missing link ‘MassSpectrum’
Rd warning: screenSpectra.Rd:27: missing link ‘Qn’
Rd warning: screenSpectra.Rd:42: missing link ‘Qn’
    snrPeaks                                html  
Rd warning: snrPeaks.Rd:16: missing link ‘MassPeaks’
Rd warning: snrPeaks.Rd:20: missing link ‘MassPeaks’
Rd warning: snrPeaks.Rd:20: missing link ‘detectPeaks’
    spectra                                 html  
Rd warning: spectra.Rd:8: missing link ‘MassSpectrum’
    summary.scSpectra                       html  
    summaryPeaks                            html  
Rd warning: summaryPeaks.Rd:8: missing link ‘MassPeaks’
Rd warning: summaryPeaks.Rd:16: missing link ‘MassPeaks’
Rd warning: summaryPeaks.Rd:22: missing link ‘MassPeaks’
Rd warning: summaryPeaks.Rd:25: missing link ‘MassPeaks’
    summarySpectra                          html  
Rd warning: summarySpectra.Rd:8: missing link ‘MassSpectrum’
Rd warning: summarySpectra.Rd:16: missing link ‘MassSpectrum’
Rd warning: summarySpectra.Rd:22: missing link ‘MassSpectrum’
Rd warning: summarySpectra.Rd:25: missing link ‘MassSpectrum’
    transfIntensity                         html  
Rd warning: transfIntensity.Rd:8: missing link ‘MassSpectrum-class’
Rd warning: transfIntensity.Rd:15: missing link ‘MassSpectrum-class’
Rd warning: transfIntensity.Rd:25: missing link ‘transformIntensity’
Rd warning: transfIntensity.Rd:28: missing link ‘MassSpectrum-class’
    type                                    html  
    wavSmoothing                            html  
Rd warning: wavSmoothing.Rd:8: missing link ‘MassSpectrum’
Rd warning: wavSmoothing.Rd:17: missing link ‘MassSpectrum’
Rd warning: wavSmoothing.Rd:36: missing link ‘MassSpectrum’
    writeIntensity                          html  
Rd warning: writeIntensity.Rd:8: missing link ‘intensityMatrix’
Rd warning: writeIntensity.Rd:17: missing link ‘intensityMatrix’
    writeMetadata                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MALDIrppa)