* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘MALDIquant’ ...
** this is package ‘MALDIquant’ version ‘1.22.3’
** package ‘MALDIquant’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5oWGwM/R.INSTALL2b981df1bdd7f/MALDIquant/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c colMedians.c -o colMedians.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c localMaxima.c -o localMaxima.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c lowerConvexHull.c -o lowerConvexHull.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c morphologicalFilters.c -o morphologicalFilters.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c snip.c -o snip.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o MALDIquant.so colMedians.o init.o localMaxima.o lowerConvexHull.o morphologicalFilters.o snip.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5oWGwM/R.INSTALL2b981df1bdd7f/MALDIquant/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5oWGwM/R.INSTALL2b981df1bdd7f/MALDIquant/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5oWGwM/R.INSTALL2b981df1bdd7f/MALDIquant/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-MALDIquant/00new/MALDIquant/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘approxfun’ from package ‘stats’ in package ‘MALDIquant’
** help
*** installing help indices
  converting help for package ‘MALDIquant’
    finding HTML links ... done
    AbstractMassObject-class                html  
    MALDIquant-defunct                      html  
    MALDIquant-deprecated                   html  
    MALDIquant-package                      html  
    MALDIquant-parallel                     html  
    MassPeaks-class                         html  
    MassSpectrum-class                      html  
    alignSpectra-functions                  html  
    averageMassSpectra-functions            html  
    binPeaks-functions                      html  
    calibrateIntensity-methods              html  
    createMassPeaks-functions               html  
    createMassSpectrum-functions            html  
    detectPeaks-methods                     html  
    determineWarpingFunctions-functions     html  
    estimateBaseline-methods                html  
    estimateNoise-methods                   html  
    fiedler2009subset                       html  
    filterPeaks-functions                   html  
    findEmptyMassObjects-functions          html  
    intensityMatrix-functions               html  
    isMassObject-functions                  html  
    isMassObjectList-functions              html  
    labelPeaks-methods                      html  
    match.closest                           html  
    mergeMassPeaks-functions                html  
    monoisotopicPeaks-methods               html  
    msiSlices-functions                     html  
    plot-methods                            html  
    plotMsiSlice-methods                    html  
    referencePeaks-functions                html  
    removeBaseline-methods                  html  
    smoothIntensity-methods                 html  
    transformIntensity-methods              html  
    trim-methods                            html  
    warp-functions                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (MALDIquant)