* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘LocaTT’ ...
** this is package ‘LocaTT’ version ‘1.2.0’
** package ‘LocaTT’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘LocaTT’
    finding HTML links ... done
    adjust_taxonomies                       html  
    binomial_test                           html  
    blast_command_found                     html  
    blast_version                           html  
    circle                                  html  
    contains_wildcards                      html  
    coordinates                             html  
    decode_quality_scores                   html  
    detection                               html  
    expand_taxonomies                       html  
    filter_sequences                        html  
    format_reference_database               html  
    get_consensus_taxonomy                  html  
    get_taxonomic_level                     html  
    get_taxonomies.IUCN                     html  
    get_taxonomies.species_binomials        html  
    isolate_amplicon                        html  
    local_taxa_tool                         html  
    merge_pairs                             html  
    proportion                              html  
    read.fasta                              html  
    read.fastq                              html  
    reverse_complement                      html  
    sector                                  html  
    singular.detection                      html  
    singular.proportion                     html  
    substitute_wildcards                    html  
    summarize_quality_scores                html  
    template                                html  
    trim_sequences                          html  
    truncate_and_merge_pairs                html  
    truncate_sequences.length               html  
    truncate_sequences.probability          html  
    truncate_sequences.quality_score        html  
    write.fasta                             html  
    write.fastq                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LocaTT)