* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘LipidMS’ ...
** package ‘LipidMS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpSayYCK/R.INSTALLf14be5e101f9d/LipidMS/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Peakpicking.cpp -o Peakpicking.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c clustdist.cpp -o clustdist.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o LipidMS.so Peakpicking.o clustdist.o init.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpSayYCK/R.INSTALLf14be5e101f9d/LipidMS/src'
make[1]: Entering directory '/tmp/RtmpSayYCK/R.INSTALLf14be5e101f9d/LipidMS/src'
make[1]: Leaving directory '/tmp/RtmpSayYCK/R.INSTALLf14be5e101f9d/LipidMS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-LipidMS/00new/LipidMS/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘LipidMS’
finding HTML links ... done
CEdb html
LipidMSapp html
MassAcylCer html
MassCE html
MassCL html
MassCarnitines html
MassCer html
MassCerP html
MassDG html
MassFA html
MassFAHFA html
MassGlcCer html
MassHFA html
MassLysoPA html
MassLysoPAo html
MassLysoPC html
MassLysoPCo html
MassLysoPCp html
MassLysoPE html
MassLysoPEo html
MassLysoPEp html
MassLysoPG html
MassLysoPI html
MassLysoPS html
MassMG html
MassPA html
MassPC html
MassPCo html
MassPCp html
MassPE html
MassPEo html
MassPEp html
MassPG html
MassPI html
MassPIP html
MassPIP2 html
MassPIP3 html
MassPS html
MassSM html
MassSph html
MassSphP html
MassTG html
acylcerdb html
adductsTable html
alignmsbatch html
annotateIsotopes html
annotatemsbatch html
assignDB html
baconjdb html
badb html
batchdataProcessing html
carnitinesdb html
cbs html
cerPdb html
cerdb html
chainFrags html
chains html
checkClass html
checkIntRules html
checkIntensityRules html
cldb html
clust html
clustdist html
clustering html
coelutingFrags html
coelutionScore html
combineChains html
confLevels html
createLipidDB html
crossAdducts html
crossTables html
dataProcessing html
dbFourChains html
dbOneChain html
dbSphingolipids html
dbThreeChains html
dbTwoChains html
ddaFrags html
dgdb html
diffcb html
fadb html
fahfadb html
fillpeaksmsbatch html
filtermsms html
filtrateAdducts html
findCandidates html
findMS2precursor html
findPrecursor html
frags html
getFormula html
getInclusionList html
getallpeaks html
getfeaturestable html
groupmsbatch html
hfadb html
idAcylCerneg html
idAcylCerpos html
idBAneg html
idCEpos html
idCLneg html
idCarpos html
idCerPneg html
idCerPpos html
idCerneg html
idCerpos html
idDGpos html
idFAHFAneg html
idFAneg html
idLPCneg html
idLPCpos html
idLPEneg html
idLPEpos html
idLPGneg html
idLPIneg html
idLPSneg html
idMGpos html
idNEG html
idPCneg html
idPConeg html
idPCopos html
idPCpneg html
idPCpos html
idPCppos html
idPEneg html
idPEoneg html
idPEopos html
idPEpneg html
idPEpos html
idPEppos html
idPGneg html
idPGpos html
idPIneg html
idPIpos html
idPOS html
idPSneg html
idSMneg html
idSMpos html
idSphPneg html
idSphPpos html
idSphneg html
idSphpos html
idTGpos html
indexrtpart html
joinAnnotationResults html
joinfrags html
lysopadb html
lysopaodb html
lysopcdb html
lysopcodb html
lysopcpdb html
lysopedb html
lysopeodb html
lysopepdb html
lysopgdb html
lysopidb html
lysopsdb html
mgdb html
mzMatch html
nlsphdb html
organizeResults html
padb html
partitioning html
pcdb html
pcodb html
pcpdb html
peakdetection html
pedb html
peodb html
pepdb html
pgdb html
pidb html
plotLipids html
ploteicmsbatch html
plotticmsbatch html
psdb html
readMSfile html
rtcorrection html
rtdevplot html
searchIsotopes html
searchIsotopesmsbatch html
select html
setmsbatch html
smdb html
sphPdb html
sphdb html
sumChains html
tgdb html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LipidMS)