* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Libra’ ...
** package ‘Libra’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpCekxwq/R.INSTALL3eba5513f0b563/Libra/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LBLasso.c -o LBLasso.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LBheader.c -o LBheader.o
LBheader.c: In function ‘ising_grad’:
LBheader.c:51:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
51 | for(int i=0;i<d;++i)
| ^~~
LBheader.c:57:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
57 | gsl_blas_dgemm(CblasNoTrans,CblasNoTrans, 1, W_temp, X, 0, G);
| ^~~~~~~~~~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LBlogistic.c -o LBlogistic.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LBmultilogistic.c -o LBmultilogistic.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Libra_init.c -o Libra_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ggm_C.c -o ggm_C.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ising_C.c -o ising_C.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c potts_C.c -o potts_C.o
potts_C.c: In function ‘potts_C’:
potts_C.c:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i=0;i<nt;++i)
| ^~~
potts_C.c:85:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
85 | double maxiter = (t_r[nt-1]-t_r[0])/alpha+1;
| ^~~~~~
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Libra.so LBLasso.o LBheader.o LBlogistic.o LBmultilogistic.o Libra_init.o ggm_C.o ising_C.o potts_C.o -L/usr/local/lib -lgsl -lgslcblas -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpCekxwq/R.INSTALL3eba5513f0b563/Libra/src'
make[1]: Entering directory '/tmp/RtmpCekxwq/R.INSTALL3eba5513f0b563/Libra/src'
make[1]: Leaving directory '/tmp/RtmpCekxwq/R.INSTALL3eba5513f0b563/Libra/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Libra/00new/Libra/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Libra’
finding HTML links ... done
cv.iss html
cv.lb html
diabetes html
ggm html
ising html
isingdata html
iss html
lb html
plot.lb html
potts html
predict.lb html
west10 html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Libra)