Install log for 'LibOPF'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘LibOPF’ ...
** package ‘LibOPF’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpnQpRbt/R.INSTALL3eb9d755b49b5/LibOPF/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_split.c -o code/opf_split.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_accuracy.c -o code/opf_accuracy.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_accuracy4label.c -o code/opf_accuracy4label.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_train.c -o code/opf_train.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_semi.c -o code/opf_semi.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_classify.c -o code/opf_classify.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_learn.c -o code/opf_learn.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_distance.c -o code/opf_distance.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_info.c -o code/opf_info.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_fold.c -o code/opf_fold.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_merge.c -o code/opf_merge.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_cluster.c -o code/opf_cluster.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_pruning.c -o code/opf_pruning.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opf_normalize.c -o code/opf_normalize.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opfknn_train.c -o code/opfknn_train.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c code/opfknn_classify.c -o code/opfknn_classify.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tools/src/txt2opf.c -o tools/src/txt2opf.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tools/src/opf2txt.c -o tools/src/opf2txt.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tools/src/opf_check.c -o tools/src/opf_check.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tools/src/opf2svm.c -o tools/src/opf2svm.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c tools/src/svm2opf.c -o tools/src/svm2opf.o
gcc-13 -O3 -Wall -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -c ./code/util/common.c -o ./code/util/common.o  -fPIC 
gcc-13 -O3 -Wall -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -c ./code/util/set.c -o ./code/util/set.o -fPIC 
gcc-13 -O3 -Wall -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -c ./code/util/gqueue.c -o ./code/util/gqueue.o -fPIC 
gcc-13 -O3 -Wall -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -c ./code/util/realheap.c -o ./code/util/realheap.o -fPIC 
gcc-13 -O3 -Wall -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -c ./code/util/sgctree.c -o ./code/util/sgctree.o -fPIC 
gcc-13 -O3 -Wall -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -c ./code/util/subgraph.c -o ./code/util/subgraph.o -fPIC 
gcc-13 -O3 -Wall -c ./code/OPF.c -I./include -I./include/util -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -o ./code/util/OPF.o -fPIC 
ar csr ./include/libOPF.a \
./code/util/common.o \
./code/util/set.o \
./code/util/gqueue.o \
./code/util/realheap.o \
./code/util/sgctree.o \
./code/util/subgraph.o \
./code/util/OPF.o \

echo "libOPF.a built..."
libOPF.a built...
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o LibOPF.so code/opf_split.o code/opf_accuracy.o code/opf_accuracy4label.o code/opf_train.o code/opf_semi.o code/opf_classify.o code/opf_learn.o code/opf_distance.o code/opf_info.o code/opf_fold.o code/opf_merge.o code/opf_cluster.o code/opf_pruning.o code/opf_normalize.o code/opfknn_train.o code/opfknn_classify.o init.o tools/src/txt2opf.o tools/src/opf2txt.o tools/src/opf_check.o tools/src/opf2svm.o tools/src/svm2opf.o -L././include -lOPF -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpnQpRbt/R.INSTALL3eb9d755b49b5/LibOPF/src'
make[1]: Entering directory '/tmp/RtmpnQpRbt/R.INSTALL3eb9d755b49b5/LibOPF/src'
make[1]: Leaving directory '/tmp/RtmpnQpRbt/R.INSTALL3eb9d755b49b5/LibOPF/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-LibOPF/00new/LibOPF/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘LibOPF’
    finding HTML links ... done
    SNode-class                             html  
    opf2svm                                 html  
    opf2txt                                 html  
    opf_accuracy                            html  
    opf_accuracy4label                      html  
    opf_check                               html  
    opf_classify                            html  
    opf_cluster                             html  
    opf_create_subGraph                     html  
    opf_distance                            html  
    opf_fold                                html  
    opf_info                                html  
    opf_knn_classify                        html  
    opf_knn_train                           html  
    opf_learn                               html  
    opf_merge                               html  
    opf_normalize                           html  
    opf_pruning                             html  
    opf_read_classification                 html  
    opf_read_distances                      html  
    opf_read_modelfile                      html  
    opf_read_subGraph                       html  
    opf_run_example                         html  
    opf_semi                                html  
    opf_split                               html  
    opf_train                               html  
    opf_write_classification                html  
    opf_write_distances                     html  
    opf_write_modelfile                     html  
    opf_write_subGraph                      html  
    subGraph-class                          html  
    svm2opf                                 html  
    txt2opf                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LibOPF)