* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘LakeMetabolizer’ ... ** this is package ‘LakeMetabolizer’ version ‘1.5.5’ ** package ‘LakeMetabolizer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNSYcw8/R.INSTALL263e2065531312/LakeMetabolizer/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c LakeMetabolizer_init.c -o LakeMetabolizer_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kalmanLoop.c -o kalmanLoop.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c kalmanLoopTemp.c -o kalmanLoopTemp.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mleLoop.c -o mleLoop.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o LakeMetabolizer.so LakeMetabolizer_init.o kalmanLoop.o kalmanLoopTemp.o mleLoop.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNSYcw8/R.INSTALL263e2065531312/LakeMetabolizer/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpNSYcw8/R.INSTALL263e2065531312/LakeMetabolizer/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpNSYcw8/R.INSTALL263e2065531312/LakeMetabolizer/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-LakeMetabolizer/00new/LakeMetabolizer/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘LakeMetabolizer’ finding HTML links ... done calc.lw.net html calc.zeng html get.Ts html get.vars html getSchmidt html has.vars html is.day html is.night html k.read html k.read.base html k600.2.kGAS html load.all.data html Rd warning: load.all.data.Rd:27: missing link ‘load.ts’ load.meta html Rd warning: load.meta.Rd:20: missing link ‘load.ts’ metab html metab.bayesian html Rd warning: metab.bayesian.Rd:17: missing link ‘ts.meta.depths’ metab.bookkeep html Rd warning: metab.bookkeep.Rd:17: missing link ‘ts.meta.depths’ metab.kalman html Rd warning: metab.kalman.Rd:17: missing link ‘ts.meta.depths’ metab.mle html Rd warning: metab.mle.Rd:17: missing link ‘ts.meta.depths’ metab.ols html Rd warning: metab.ols.Rd:17: missing link ‘ts.meta.depths’ o2.at.sat html Rd warning: o2.at.sat.Rd:103: missing link ‘water.density’ par.to.sw html rmv.vars html sun.rise.set html sw.to.par html temp.kalman html var.indx html watts.in html wind.scale html ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (LakeMetabolizer)