* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘LakeMetabolizer’ ...
** this is package ‘LakeMetabolizer’ version ‘1.5.5’
** package ‘LakeMetabolizer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxxfpqF/R.INSTALL35d2b86e4db818/LakeMetabolizer/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c LakeMetabolizer_init.c -o LakeMetabolizer_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kalmanLoop.c -o kalmanLoop.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kalmanLoopTemp.c -o kalmanLoopTemp.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c mleLoop.c -o mleLoop.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o LakeMetabolizer.so LakeMetabolizer_init.o kalmanLoop.o kalmanLoopTemp.o mleLoop.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxxfpqF/R.INSTALL35d2b86e4db818/LakeMetabolizer/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxxfpqF/R.INSTALL35d2b86e4db818/LakeMetabolizer/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxxfpqF/R.INSTALL35d2b86e4db818/LakeMetabolizer/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-LakeMetabolizer/00new/LakeMetabolizer/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘LakeMetabolizer’
    finding HTML links ... done
    calc.lw.net                             html  
    calc.zeng                               html  
    get.Ts                                  html  
    get.vars                                html  
    getSchmidt                              html  
    has.vars                                html  
    is.day                                  html  
    is.night                                html  
    k.read                                  html  
    k.read.base                             html  
    k600.2.kGAS                             html  
    load.all.data                           html  
Rd warning: load.all.data.Rd:27: missing link ‘load.ts’
    load.meta                               html  
Rd warning: load.meta.Rd:20: missing link ‘load.ts’
    metab                                   html  
    metab.bayesian                          html  
Rd warning: metab.bayesian.Rd:17: missing link ‘ts.meta.depths’
    metab.bookkeep                          html  
Rd warning: metab.bookkeep.Rd:17: missing link ‘ts.meta.depths’
    metab.kalman                            html  
Rd warning: metab.kalman.Rd:17: missing link ‘ts.meta.depths’
    metab.mle                               html  
Rd warning: metab.mle.Rd:17: missing link ‘ts.meta.depths’
    metab.ols                               html  
Rd warning: metab.ols.Rd:17: missing link ‘ts.meta.depths’
    o2.at.sat                               html  
Rd warning: o2.at.sat.Rd:103: missing link ‘water.density’
    par.to.sw                               html  
    rmv.vars                                html  
    sun.rise.set                            html  
    sw.to.par                               html  
    temp.kalman                             html  
    var.indx                                html  
    watts.in                                html  
    wind.scale                              html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LakeMetabolizer)