* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘LCMCR’ ...
** package ‘LCMCR’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gcc... gcc-13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to enable C11 features... none needed
checking for gsl-config... /usr/bin/gsl-config
checking for GSL - version >= 2.5... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpmH6hq7/R.INSTALL231b9846823f5f/LCMCR/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c R_Interface/registration.cpp -o R_Interface/registration.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c R_Interface/R_Lcm_CR.cpp -o R_Interface/R_Lcm_CR.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c NPLCM_CR_Basic_Freq.cpp -o NPLCM_CR_Basic_Freq.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/R_Environ_Simple.cpp -o daniel2/R_Environ_Simple.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CChain.cpp -o daniel2/CChain.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CParam.cpp -o daniel2/CParam.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CData.cpp -o daniel2/CData.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CParam_generic.cpp -o daniel2/CParam_generic.o
daniel2/CParam_generic.cpp:55: warning: ignoring ‘#pragma omp critical’ [-Wunknown-pragmas]
55 | #pragma omp critical
|
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/CVariable_Container.cpp -o daniel2/CVariable_Container.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -I/usr/include -I./ -I../ -DUSING_R -I -DHAVE_INLINE -DNDEBUG -DR_NO_REMAP -fpic -g -O2 -Wall -pedantic -mtune=native -c daniel2/dan_array_utils.cpp -o daniel2/dan_array_utils.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o LCMCR.so R_Interface/registration.o R_Interface/R_Lcm_CR.o ./NPLCM_CR_Basic_Freq.o daniel2/R_Environ_Simple.o daniel2/CChain.o daniel2/CParam.o daniel2/CData.o daniel2/CParam_generic.o daniel2/CVariable_Container.o daniel2/dan_array_utils.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpmH6hq7/R.INSTALL231b9846823f5f/LCMCR/src'
make[1]: Entering directory '/tmp/RtmpmH6hq7/R.INSTALL231b9846823f5f/LCMCR/src'
make[1]: Leaving directory '/tmp/RtmpmH6hq7/R.INSTALL231b9846823f5f/LCMCR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-LCMCR/00new/LCMCR/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘LCMCR’
finding HTML links ... done
LCMCR-package html
MCMCenviron html
kosovo_aggregate html
lcmCR html
lcmCR_PostSampl html
lcm_CR_Basic html
lcm_CR_Basic_generator html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (LCMCR)