- using R version 4.5.2 Patched (2026-01-31 r89374)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.3.0-10) 14.3.0
GNU Fortran (Debian 14.3.0-10) 14.3.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘LAGOSNE/DESCRIPTION’ ... OK
- this is package ‘LAGOSNE’ version ‘2.0.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘LAGOSNE’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/2s] OK
- checking whether startup messages can be suppressed ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/13s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [3s/4s] ERROR
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(LAGOSNE)
>
> test_check("LAGOSNE")
Saving _problems/test-lake_info-8.R
Saving _problems/test-lake_info-41.R
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 3 ]
══ Skipped tests (11) ══════════════════════════════════════════════════════════
• On CRAN (11): 'test-info_table.R:4:3', 'test-lagos_get.R:5:3',
'test-lagos_get.R:15:3', 'test-lagos_load.R:5:3', 'test-lagos_load.R:17:3',
'test-lagos_load.R:28:3', 'test-lagos_select.R:5:3',
'test-lagos_select.R:101:3', 'test-lake_info.R:17:3',
'test-lake_info.R:27:3', 'test_display-names.R:5:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-lake_info.R:7:3'): lake_info works ─────────────────────────────
<lifecycle_error_deprecated/defunctError/rlang_error/error/condition>
Error: `filter_()` was deprecated in dplyr 0.7.0 and is now defunct.
ℹ Please use `filter()` instead.
ℹ See vignette('programming') for more help
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-lake_info.R:7:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. ├─base::nrow(lake_info(name = "Pine Lake", state = "Iowa", dt = dt))
5. └─LAGOSNE::lake_info(name = "Pine Lake", state = "Iowa", dt = dt)
6. ├─base::do.call(...)
7. └─base::apply(...)
8. └─LAGOSNE (local) FUN(newX[, i], ...)
9. └─LAGOSNE:::lake_info_(...)
10. └─dplyr::filter_(dt_filter, filter_criteria)
11. └─dplyr:::lazy_defunct("filter")
12. └─lifecycle::deprecate_stop(...)
13. └─lifecycle:::deprecate_stop0(msg)
14. └─rlang::cnd_signal(...)
── Failure ('test-lake_info.R:40:3'): lake_info fails well ─────────────────────
`lake_info(name = "gibberish", state = "Wisconsin", dt = dt)` threw an error with unexpected message.
Expected match: "Lake 'gibberish' in Wisconsin not found"
Actual message: "`filter_()` was deprecated in dplyr 0.7.0 and is now defunct.\nℹ Please use `filter()` instead.\nℹ See vignette('programming') for more help"
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-lake_info.R:40:3
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─LAGOSNE::lake_info(name = "gibberish", state = "Wisconsin", dt = dt)
7. ├─base::do.call(...)
8. └─base::apply(...)
9. └─LAGOSNE (local) FUN(newX[, i], ...)
10. └─LAGOSNE:::lake_info_(...)
11. └─dplyr::filter_(dt_filter, filter_criteria)
12. └─dplyr:::lazy_defunct("filter")
13. └─lifecycle::deprecate_stop(...)
14. └─lifecycle:::deprecate_stop0(msg)
15. └─rlang::cnd_signal(...)
[ FAIL 2 | WARN 0 | SKIP 11 | PASS 3 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [2s/3s] OK
- checking PDF version of manual ... [5s/6s] OK
- checking HTML version of manual ... [1s/3s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR