* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘IFC’ ...
** package ‘IFC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-7) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp9jej1v/R.INSTALL28686f50722272/IFC/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -c ifc.cpp -o ifc.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o IFC.so RcppExports.o ifc.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp9jej1v/R.INSTALL28686f50722272/IFC/src'
make[1]: Entering directory '/tmp/Rtmp9jej1v/R.INSTALL28686f50722272/IFC/src'
make[1]: Leaving directory '/tmp/Rtmp9jej1v/R.INSTALL28686f50722272/IFC/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-IFC/00new/IFC/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘IFC’
    finding HTML links ... done
    BatchReport                             html  
    BatchStatsReport                        html  
    CreateGraphReport                       html  
    DisplayGallery                          html  
    DisplayReport                           html  
    ExportToBATCH                           html  
    ExportToDAF                             html  
    ExportToFCS                             html  
    ExportToGallery                         html  
    ExportToNumpy                           html  
    ExportToReport                          html  
    ExportToXIF                             html  
    ExtractFromDAF                          html  
    ExtractFromFCS                          html  
    ExtractFromXIF                          html  
    ExtractImages_toBase64                  html  
    ExtractImages_toFile                    html  
    ExtractImages_toMatrix                  html  
    ExtractMasks_toBase64                   html  
    ExtractMasks_toFile                     html  
    ExtractMasks_toMatrix                   html  
    FCS_check_keywords                      html  
    FCS_merge_dataset                       html  
    FCS_merge_sample                        html  
    FCS_to_data                             html  
    IFC-package                             html  
    StatsReport                             html  
    XIFtoTIFF                               html  
    addScaleBar                             html  
    addText                                 html  
    adjustGraph                             html  
    applyGatingStrategy                     html  
    applyTrans                              html  
    assert                                  html  
    autoplot                                html  
    base64_encode                           html  
    base_axis_constr                        html  
    base_hist_constr                        html  
    buildBatch                              html  
    buildFeature                            html  
    buildGraph                              html  
    buildIFD                                html  
    buildImage                              html  
    buildMask                               html  
    buildPopulation                         html  
    buildRegion                             html  
    buildStats                              html  
    calcDensity                             html  
    checkColor                              html  
    checkObj                                html  
    checksumDAF                             html  
    checksumIFC                             html  
    checksumXIF                             html  
    colConv                                 html  
    collapse_raw                            html  
    computeGamma                            html  
    convert_spillover                       html  
    coord_to_px                             html  
    cpp_M_HSV2RGB                           html  
    cpp_align                               html  
    cpp_as_nativeRaster                     html  
    cpp_assert                              html  
    cpp_base64_encode                       html  
    cpp_checkTIFF                           html  
    cpp_checksum                            html  
    cpp_cleanse                             html  
    cpp_computeGamma                        html  
    cpp_coord_to_px                         html  
    cpp_crop                                html  
    cpp_decomp                              html  
    cpp_draw                                html  
    cpp_ell_coord                           html  
    cpp_extract                             html  
    cpp_fastTAGS                            html  
    cpp_fast_factor                         html  
    cpp_fast_listAny                        html  
    cpp_fast_range                          html  
    cpp_fast_rowAny                         html  
    cpp_fast_sample                         html  
    cpp_getBits                             html  
    cpp_getTAGS                             html  
    cpp_get_bytes_order                     html  
    cpp_getoffsets_noid                     html  
    cpp_getoffsets_wid                      html  
    cpp_group_df                            html  
    cpp_int32_to_uint32                     html  
    cpp_int64_to_uint64                     html  
    cpp_inv_smoothLinLog                    html  
    cpp_mark                                html  
    cpp_mask                                html  
    cpp_mpfmatch                            html  
    cpp_normalize                           html  
    cpp_offset_to_raw                       html  
    cpp_pnt_in_gate                         html  
    cpp_raster                              html  
    cpp_raw_to_offset                       html  
    cpp_rawdecomp                           html  
    cpp_replace_non_finite                  html  
    cpp_resize                              html  
    cpp_scanFirst                           html  
    cpp_seqmatch                            html  
    cpp_smoothLinLog                        html  
    cpp_transform                           html  
    cpp_uint32_to_int32                     html  
    cpp_uint32_to_raw                       html  
    cpp_uint64_to_int64                     html  
    cpp_v_int32_to_uint32                   html  
    cpp_v_int64_to_uint64                   html  
    cpp_writeBMP                            html  
    data_add_features                       html  
    data_add_graphs                         html  
    data_add_pop_sample                     html  
    data_add_pops                           html  
    data_add_regions                        html  
    data_modify_pops                        html  
    data_modify_regions                     html  
    data_rm_features                        html  
    data_rm_graphs                          html  
    data_rm_pops                            html  
    data_rm_regions                         html  
    data_to_AST                             html  
    data_to_DAF                             html  
    densCols                                html  
    endPB                                   html  
    escape_entities                         html  
    expand_list                             html  
    extractStats                            html  
    fastAny                                 html  
    fastCbind                               html  
    featureIFC                              html  
    feature_namer                           html  
    fetch_seed                              html  
    formatn                                 html  
    fromXML2_gating                         html  
    gen_altnames                            html  
    getASSIST                               html  
    getAborted                              html  
    getFeaturesValues                       html  
    getFileExt                              html  
    getFullTag                              html  
    getIFD                                  html  
    getImagesValues                         html  
    getInfo                                 html  
    getLuminance                            html  
    getOffsets                              html  
    getSTATSREPORT                          html  
    get_coordmap_adjusted                   html  
    get_coordmap_raw                        html  
    get_feat_value                          html  
    get_pops_stats                          html  
    get_ylim                                html  
    group                                   html  
    gseq                                    html  
    hist_constr                             html  
    inv_colConv                             html  
    inv_smoothAsinh                         html  
    inv_smoothLinLog                        html  
    layoutReport                            html  
    map_color                               html  
    map_style                               html  
    mergeXIF                                html  
    modifyGamma                             html  
    myScales                                html  
    newPB                                   html  
    next_bool                               html  
    num_to_string                           html  
    objectCleanse                           html  
    objectColorize                          html  
    objectDisplay                           html  
    objectExtract                           html  
    objectNormalize                         html  
    objectParam                             html  
    objectResize                            html  
    objectTransform                         html  
    objectWrite                             html  
    paletteIFC                              html  
    pan_hist                                html  
    pan_key                                 html  
    pan_smooth                              html  
    parseFCSname                            html  
    parseTrans                              html  
    plotGraph                               html  
    plot_base                               html  
    plot_lattice                            html  
    plot_raster                             html  
    plot_stats                              html  
    polyExtractTo                           html  
    popsCompute                             html  
    popsCopy                                html  
    popsGetAffiliation                      html  
    popsGetLevels                           html  
    popsGetObjectsIds                       html  
    popsGetSiblings                         html  
    popsGetSiblings1                        html  
    popsGetSiblings2                        html  
    popsNetwork                             html  
    popsOrderNodes                          html  
    popsRename                              html  
    popsRetrieveGraph                       html  
    popsWithin                              html  
    pow2                                    html  
    protectn                                html  
    pseudo_seed                             html  
    random_name                             html  
    rasterplot                              html  
    readFCS                                 html  
    readFCSdata                             html  
    readFCSdataset                          html  
    readFCSdelimiter                        html  
    readFCSheader                           html  
    readFCStext                             html  
    readGatingML                            html  
    readGatingStrategy                      html  
    readIFC                                 html  
    redefine_features_def                   html  
    redefine_features_def_feat              html  
    redefine_features_def_msk_img           html  
    redefine_masks                          html  
    redefine_masks_image                    html  
    redefine_masks_mask                     html  
    redefine_obj                            html  
    relayout                                html  
    remove_ext                              html  
    rev_string                              html  
    setPB                                   html  
    smoothAsinh                             html  
    smoothLinLog                            html  
    specialr                                html  
    split_feat                              html  
    splitf                                  html  
    splitn                                  html  
    splitp                                  html  
    subsetOffsets                           html  
    subsetXIF                               html  
    swap_channel                            html  
    switch_channel                          html  
    testXIF                                 html  
    texttomatrix                            html  
    toBIN_features                          html  
    toBIN_images                            html  
    toCapFirstOnly                          html  
    toEllipse                               html  
    toXML2_boolpop_gs                       html  
    toXML2_features                         html  
    toXML2_features_def                     html  
    toXML2_graphpop_gs                      html  
    toXML2_graphs                           html  
    toXML2_graphs_gs                        html  
    toXML2_images                           html  
    toXML2_masks                            html  
    toXML2_pops                             html  
    toXML2_regions                          html  
    toXML2_spillover_gs                     html  
    toXML2_stats                            html  
    to_list_node                            html  
    to_xml_list                             html  
    trunc_string                            html  
    tryReportFileCreation                   html  
    type_constr                             html  
    usedefault_obj                          html  
    val_constr                              html  
    validate_bool                           html  
    whoami                                  html  
    with_seed                               html  
    writeGatingStrategy                     html  
    writeIFC                                html  
    writeIFD                                html  
    xml_new_node                            html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path