* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HodgesTools’ ...
** this is package ‘HodgesTools’ version ‘1.0.0’
** package ‘HodgesTools’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘HodgesTools’
    finding HTML links ... done
    append_section_to_ini                   html  
    cpg_analysis                            html  
    createManhattandQQ                      html  
    helper_collapseTableByLevenSim          html  
    helper_getMaxLevenSimCol                html  
    helper_makeBigTableFromListOfStandardTables
                                            html  
    plot_HOMERTFs                           html  
    read_bed                                html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HodgesTools)