* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HiddenMarkov’ ...
** this is package ‘HiddenMarkov’ version ‘1.8-14’
** package ‘HiddenMarkov’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
using Fortran compiler: ‘GNU Fortran (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbtEVhn/R.INSTALL3d05cd7cc37bc9/HiddenMarkov/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c HiddenMarkov_init.c -o HiddenMarkov_init.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c dthmm.f -o dthmm.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c extract.f -o extract.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c mmpp.f -o mmpp.o
gfortran-14  -fpic  -g -O2 -Wall -pedantic -mtune=native  -c multiply.f -o multiply.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o HiddenMarkov.so HiddenMarkov_init.o dthmm.o extract.o mmpp.o multiply.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbtEVhn/R.INSTALL3d05cd7cc37bc9/HiddenMarkov/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpbtEVhn/R.INSTALL3d05cd7cc37bc9/HiddenMarkov/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpbtEVhn/R.INSTALL3d05cd7cc37bc9/HiddenMarkov/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-HiddenMarkov/00new/HiddenMarkov/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘HiddenMarkov’
    finding HTML links ... done
    BaumWelch                               html  
    Changes                                 html  
    Demonstration                           html  
    Estep                                   html  
    HiddenMarkov-defunct                    html  
    HiddenMarkov-dthmm-deprecated           html  
    HiddenMarkov-internal                   html  
    HiddenMarkov-mmpp-deprecated            html  
    HiddenMarkov                            html  
    Mstep                                   html  
    Transform-Parameters                    html  
    Viterbi                                 html  
    bwcontrol                               html  
    compdelta                               html  
    dthmm                                   html  
    forwardback                             html  
    logLik                                  html  
    mchain                                  html  
    mmglm-2nd-level-functions               html  
    mmglm                                   html  
    mmpp-2nd-level-functions                html  
    mmpp                                    html  
    neglogLik                               html  
    probhmm                                 html  
    residuals                               html  
    simulate                                html  
    summary                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HiddenMarkov)