* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HVS’ ...
** this is package ‘HVS’ version ‘1.0.1’
** package ‘HVS’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr2Tw9C/R.INSTALL22c1fa1d36f4b3/HVS/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c CountIndep.cpp -o CountIndep.o
CountIndep.cpp: In function ‘void count_indep(double*, const int*, const double*, const double*)’:
CountIndep.cpp:695:18: warning: unused variable ‘sz’ [-Wunused-variable]
  695 |     unsigned int sz=*n;
      |                  ^~
CountIndep.cpp: In function ‘void count_indep_import(double*, const int*, const double*, const double*, const int*)’:
CountIndep.cpp:703:18: warning: unused variable ‘sz’ [-Wunused-variable]
  703 |     unsigned int sz=*n;
      |                  ^~
CountIndep.cpp: In member function ‘double graph::select_cutoff(double, unsigned int, unsigned int, double*, double*, double*, double*)’:
CountIndep.cpp:683:20: warning: ‘jj’ may be used uninitialized [-Wmaybe-uninitialized]
  683 |   double ans=cvals[jj];
      |                    ^~
CountIndep.cpp:582:16: note: ‘jj’ was declared here
  582 |   unsigned int jj;
      |                ^~
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Hypergraph.cpp -o Hypergraph.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Set.cpp -o Set.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o HVS.so CountIndep.o Hypergraph.o Set.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr2Tw9C/R.INSTALL22c1fa1d36f4b3/HVS/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpr2Tw9C/R.INSTALL22c1fa1d36f4b3/HVS/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpr2Tw9C/R.INSTALL22c1fa1d36f4b3/HVS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-HVS/00new/HVS/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘HVS’
    finding HTML links ... done
    convex.hull                             html  
    count.indep                             html  
    count.indep.hyper                       html  
    isotonic_regression                     html  
    predict.isotonic                        html  
    select.cutoff                           html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HVS)