* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HEMDAG’ ...
** this is package ‘HEMDAG’ version ‘2.7.4’
** package ‘HEMDAG’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.3.0-10) 14.3.0’
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5xsaPs/R.INSTALLd7b383b2c6ae4/HEMDAG/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c gpav.cpp -o gpav.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o HEMDAG.so gpav.o registerDynamicSymbol.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5xsaPs/R.INSTALLd7b383b2c6ae4/HEMDAG/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp5xsaPs/R.INSTALLd7b383b2c6ae4/HEMDAG/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp5xsaPs/R.INSTALLd7b383b2c6ae4/HEMDAG/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-HEMDAG/00new/HEMDAG/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘HEMDAG’
finding HTML links ... done
HEMDAG-package html
adj.upper.tri html
auprc html
auroc html
build.ancestors html
build.children html
build.consistent.graph html
build.descendants html
build.edges.from.hpo.obo html
build.parents html
build.scores.matrix html
build.subgraph html
build.submatrix html
check.annotation.matrix.integrity html
check.dag.integrity html
compute.flipped.graph html
constraints.matrix html
create.stratified.fold.df html
distances.from.leaves html
example.datasets html
find.best.f html
find.leaves html
fmax html
full.annotation.matrix html
gpav html
gpav.holdout html
gpav.over.examples html
gpav.parallel html
gpav.vanilla html
graph.levels html
hierarchical.checkers html
htd html
htd.holdout html
htd.vanilla html
lexicographical.topological.sort html
multilabel.F.measure html
normalize.max html
obozinski.heuristic.methods html
obozinski.holdout html
obozinski.methods html
pxr html
read.graph html
read.undirected.graph html
root.node html
scores.normalization html
specific.annotation.list html
specific.annotation.matrix html
stratified.cross.validation html
tpr.dag html
tpr.dag.cv html
tpr.dag.holdout html
transitive.closure.annotations html
tupla.matrix html
unstratified.cv.data html
weighted.adjacency.matrix html
write.graph html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HEMDAG)