* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘HEMDAG’ ...
** package ‘HEMDAG’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmpgEmE6S/R.INSTALL135faf534d26b8/HEMDAG/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gpav.cpp -o gpav.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o HEMDAG.so gpav.o registerDynamicSymbol.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpgEmE6S/R.INSTALL135faf534d26b8/HEMDAG/src'
make[1]: Entering directory '/tmp/RtmpgEmE6S/R.INSTALL135faf534d26b8/HEMDAG/src'
make[1]: Leaving directory '/tmp/RtmpgEmE6S/R.INSTALL135faf534d26b8/HEMDAG/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-HEMDAG/00new/HEMDAG/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘HEMDAG’
    finding HTML links ... done
    HEMDAG-package                          html  
    adj.upper.tri                           html  
    auprc                                   html  
    auroc                                   html  
    build.ancestors                         html  
    build.children                          html  
    build.consistent.graph                  html  
    build.descendants                       html  
    build.edges.from.hpo.obo                html  
    build.parents                           html  
    build.scores.matrix                     html  
    build.subgraph                          html  
    build.submatrix                         html  
    check.annotation.matrix.integrity       html  
    check.dag.integrity                     html  
    compute.flipped.graph                   html  
    constraints.matrix                      html  
    create.stratified.fold.df               html  
    distances.from.leaves                   html  
    example.datasets                        html  
    find.best.f                             html  
    find.leaves                             html  
    fmax                                    html  
    full.annotation.matrix                  html  
    gpav                                    html  
    gpav.holdout                            html  
    gpav.over.examples                      html  
    gpav.parallel                           html  
    gpav.vanilla                            html  
    graph.levels                            html  
    hierarchical.checkers                   html  
    htd                                     html  
    htd.holdout                             html  
    htd.vanilla                             html  
    lexicographical.topological.sort        html  
    multilabel.F.measure                    html  
    normalize.max                           html  
    obozinski.heuristic.methods             html  
    obozinski.holdout                       html  
    obozinski.methods                       html  
    pxr                                     html  
    read.graph                              html  
    read.undirected.graph                   html  
    root.node                               html  
    scores.normalization                    html  
    specific.annotation.list                html  
    specific.annotation.matrix              html  
    stratified.cross.validation             html  
    tpr.dag                                 html  
    tpr.dag.cv                              html  
    tpr.dag.holdout                         html  
    transitive.closure.annotations          html  
    tupla.matrix                            html  
    unstratified.cv.data                    html  
    weighted.adjacency.matrix               html  
    write.graph                             html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (HEMDAG)