* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘GreedyExperimentalDesign’ ...
** this is package ‘GreedyExperimentalDesign’ version ‘1.6’
** package ‘GreedyExperimentalDesign’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvdNXUw/R.INSTALL26c8ea5e85b729/GreedyExperimentalDesign/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c binary_match_utils.cpp -o binary_match_utils.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c create_block_allocation.cpp -o create_block_allocation.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c euclidean.cpp -o euclidean.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c fast_shuffle.cpp -o fast_shuffle.o
fast_shuffle.cpp: In function ‘bool all_elements_same_cpp(Rcpp::NumericVector)’:
fast_shuffle.cpp:39:30: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
39 | for (size_t i = 1; i < vec.size(); ++i) {
| ~~^~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c greedy_orthogonalization.cpp -o greedy_orthogonalization.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c indicTs_from_pairs.cpp -o indicTs_from_pairs.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kernel_matrix.cpp -o kernel_matrix.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c kernel_quadratic_forms.cpp -o kernel_quadratic_forms.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c leave_one_out_rij.cpp -o leave_one_out_rij.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c mahalanobis.cpp -o mahalanobis.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c objective_and_standardize.cpp -o objective_and_standardize.o
objective_and_standardize.cpp: In function ‘double compute_objective_val_cpp(Rcpp::NumericMatrix, Rcpp::IntegerVector, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >)’:
objective_and_standardize.cpp:93:32: warning: unused variable ‘mean’ [-Wunused-variable]
93 | double mean = sum_all[j] / static_cast<double>(n);
| ^~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c objective_batch.cpp -o objective_batch.o
objective_batch.cpp: In function ‘Rcpp::NumericVector compute_objective_vals_cpp(Rcpp::NumericMatrix, Rcpp::IntegerMatrix, std::string, Rcpp::Nullable<Rcpp::Matrix<14> >)’:
objective_batch.cpp:32:32: warning: unused variable ‘mean’ [-Wunused-variable]
32 | double mean = sum_all[j] / static_cast<double>(n);
| ^~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pair_differences.cpp -o pair_differences.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c random_designs.cpp -o random_designs.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c randomization_metrics.cpp -o randomization_metrics.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c var_cov_block.cpp -o var_cov_block.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o GreedyExperimentalDesign.so RcppExports.o binary_match_utils.o create_block_allocation.o euclidean.o fast_shuffle.o greedy_orthogonalization.o indicTs_from_pairs.o kernel_matrix.o kernel_quadratic_forms.o leave_one_out_rij.o mahalanobis.o objective_and_standardize.o objective_batch.o pair_differences.o random_designs.o randomization_metrics.o var_cov_block.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvdNXUw/R.INSTALL26c8ea5e85b729/GreedyExperimentalDesign/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvdNXUw/R.INSTALL26c8ea5e85b729/GreedyExperimentalDesign/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvdNXUw/R.INSTALL26c8ea5e85b729/GreedyExperimentalDesign/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-GreedyExperimentalDesign/00new/GreedyExperimentalDesign/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘GreedyExperimentalDesign’
finding HTML links ... done
GreedyExperimentalDesign html
all_elements_same_cpp_wrap html
complete_randomization html
complete_randomization_with_forced_balanced
html
computeBinaryMatchStructure html
compute_distance_matrix_cpp_wrap html
compute_gram_matrix html
compute_objective_val html
compute_randomization_metrics html
create_all_ys_cpp_wrap html
gen_pm_designs_cpp_wrap html
gen_var_cov_matrix_block_designs html
generate_block_design_cpp_wrap html
generate_stdzied_design_matrix html
greedy_orthogonalization_curation html
greedy_orthogonalization_curation2 html
hadamardExperimentalDesign html
imbalanced_block_designs html
imbalanced_complete_randomization html
initBinaryMatchExperimentalDesignSearchObject
html
initBinaryMatchFollowedByGreedyExperimentalDesignSearchObject
html
initBinaryMatchFollowedByRerandomizationDesignSearchObject
html
initGreedyExperimentalDesignObject html
initGreedyMultipleKernelExperimentalDesignObject
html
initGurobiNumericalOptimizationExperimentalDesignObject
html
initKarpExperimentalDesignObject html
initOptimalExperimentalDesignObject html
initRerandomizationExperimentalDesignObject
html
optimize_asymmetric_treatment_assignment
html
plot.greedy_experimental_design_search
html
plot.greedy_multiple_kernel_experimental_design
html
plot_obj_val_by_iter html
plot_obj_val_order_statistic html
print.binary_match_structure html
print.binary_then_greedy_experimental_design
html
print.binary_then_rerandomization_experimental_design
html
print.greedy_experimental_design_search
html
print.greedy_multiple_kernel_experimental_design
html
print.karp_experimental_design_search html
print.optimal_experimental_design_search
html
print.pairwise_matching_experimental_design_search
html
print.rerandomization_experimental_design_search
html
resultsBinaryMatchSearch html
resultsBinaryMatchThenGreedySearch html
resultsBinaryMatchThenRerandomizationSearch
html
resultsGreedySearch html
resultsGurobiNumericalOptimizeSearch html
resultsKarpSearch html
resultsMultipleKernelGreedySearch html
resultsOptimalSearch html
resultsRerandomizationSearch html
safe_cov_inverse html
searchTimeElapsed html
shuffle_cpp_wrap html
standardize_data_matrix html
startSearch html
stopSearch html
summary.binary_match_structure html
summary.binary_then_greedy_experimental_design
html
summary.binary_then_rerandomization_experimental_design
html
summary.greedy_experimental_design_search
html
summary.greedy_multiple_kernel_experimental_design
html
summary.karp_experimental_design_search
html
summary.optimal_experimental_design_search
html
summary.pairwise_matching_experimental_design_search
html
summary.rerandomization_experimental_design_search
html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GreedyExperimentalDesign)