* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘GenomicTools.fileHandler’ ...
** this is package ‘GenomicTools.fileHandler’ version ‘0.1.5.9’
** package ‘GenomicTools.fileHandler’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘GenomicTools.fileHandler’
    finding HTML links ... done
    GenomicTools.fileHandler-package        html  
    example.bed                             html  
    example.fasta                           html  
    example.fastq                           html  
    example.gff                             html  
    example.gtf                             html  
    example.ped                             html  
    example.vcf                             html  
    example2.gtf.gz                         html  
    exportBed                               html  
    exportFA                                html  
    importBed                               html  
    importBlastTab                          html  
    importFA                                html  
    importFQ                                html  
    importFeatureCounts                     html  
    importGFF                               html  
    importGFF3                              html  
    importGTF                               html  
    importPED                               html  
    importSTARLog                           html  
    importVCF                               html  
    importXML                               html  
    plotTotalReads                          html  
    plotUniquelyMappedReads                 html  
    prereadGTF                              html  
    print.bed                               html  
    print.fa                                html  
    print.featureCounts                     html  
    print.fq                                html  
    print.gtf                               html  
    print.pedMap                            html  
    print.vcf                               html  
    summary.STARLog                         html  
    summary.bed                             html  
    summary.fa                              html  
    summary.featureCounts                   html  
    summary.fq                              html  
    summary.gtf                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GenomicTools.fileHandler)