* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘GUniFrac’ ...
** package ‘GUniFrac’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpfkzltr/R.INSTALL25de926e651c50/GUniFrac/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c PairwiseD.cpp -o PairwiseD.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c gmpr.cpp -o gmpr.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o GUniFrac.so PairwiseD.o RcppExports.o gmpr.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpfkzltr/R.INSTALL25de926e651c50/GUniFrac/src'
make[1]: Entering directory '/tmp/Rtmpfkzltr/R.INSTALL25de926e651c50/GUniFrac/src'
make[1]: Leaving directory '/tmp/Rtmpfkzltr/R.INSTALL25de926e651c50/GUniFrac/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-GUniFrac/00new/GUniFrac/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘GUniFrac’
    finding HTML links ... done
    GMPR                                    html  
    GUniFrac                                html  
    PermanovaG                              html  
    PermanovaG2                             html  
    Rarefy                                  html  
    SimulateMSeq                            html  
    SimulateMSeqC                           html  
    ZicoSeq                                 html  
    ZicoSeq.plot                            html  
    adonis3                                 html  
    finding level-2 HTML links ... done

    dICC                                    html  
    dICC.SE.asympt                          html  
    dICC.SE.bt                              html  
    dmanova                                 html  
    stool.otu.tab                           html  
    throat.meta                             html  
    throat.otu.tab                          html  
    throat.tree                             html  
    vaginal.otu.tab                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GUniFrac)