• using R version 4.5.2 Patched (2025-12-21 r89220)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.3.0-10) 14.3.0     GNU Fortran (Debian 14.3.0-10) 14.3.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘GPCERF/DESCRIPTION’ ... OK
• this is package ‘GPCERF’ version ‘0.2.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘GPCERF’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
• checking C++ specification ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/4s] OK
• checking loading without being on the library search path ... [3s/4s] OK
• checking whether startup messages can be suppressed ... [4s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [20s/24s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [85s/154s] ERROR   Running ‘testthat.R’ [85s/154s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(GPCERF)   >   > test_check("GPCERF")   2025-12-24 05:56:02.233677 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   Loading required package: nnls   Saving _problems/test-compute_deriv_nn-21.R   2025-12-24 05:56:09.007578 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_deriv_weights_gp-17.R   2025-12-24 05:56:14.153259 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_m_sigma-32.R   2025-12-24 05:56:22.844967 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:56:27.920341 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:56:32.622691 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1431728 on localhost:11719 at 05:56:32.991   2025-12-24 05:56:36.649458 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.027 s.   2025-12-24 05:56:36.737625 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:56:41.547067 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:56:46.629246 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-compute_weight_gp-49.R   2025-12-24 05:56:51.321513 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:56:56.117462 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:56:59.477813 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:57:02.702593 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:02.738006 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:57:07.60434 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.632369 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.668262 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.710548 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.746562 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.768637 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.805045 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:07.833274 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:57:12.652657 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   starting worker pid=1442145 on localhost:11719 at 05:57:13.073   starting worker pid=1442146 on localhost:11719 at 05:57:13.094   2025-12-24 05:57:20.96564 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:57:26.27615 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:26.283433 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-24 05:57:26.287799 gimli2 1420650 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=1445237 on localhost:11719 at 05:57:26.636   2025-12-24 05:57:31.265884 gimli2 1420650 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.976 s.} ...   2025-12-24 05:57:31.268247 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1447064 on localhost:11719 at 05:57:31.653   2025-12-24 05:57:35.08694 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.818 s.   2025-12-24 05:57:35.089378 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=1448188 on localhost:11719 at 05:57:35.553   2025-12-24 05:57:40.709281 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.61999999999999 s.   2025-12-24 05:57:40.717003 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 14.428 s.   2025-12-24 05:57:40.726354 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:40.737785 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-24 05:57:40.777482 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:40.791359 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-24 05:57:40.862303 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:40.873276 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-24 05:57:40.902886 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:57:44.789201 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:44.801359 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-24 05:57:44.827223 gimli2 1420650 GPCERF log_system_info INFO: System name: Linux, OS type: unix, machine architecture: x86_64, user: hornik, R version 4.5.2 Patched (2025-12-21 r89220), detected cores: 32   2025-12-24 05:57:44.839198 gimli2 1420650 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...   2025-12-24 05:57:44.902013 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   Saving _problems/test-estimate_gps-15.R   2025-12-24 05:57:50.86983 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:57:55.766333 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1452950 on localhost:11719 at 05:57:56.305   2025-12-24 05:58:00.225276 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.459 s.   2025-12-24 05:58:00.227682 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...   starting worker pid=1454140 on localhost:11719 at 05:58:00.569   2025-12-24 05:58:05.400198 gimli2 1420650 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.173 s.   Saving _problems/test-estimate_mean_sd_nn-37.R   2025-12-24 05:58:05.539531 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:58:09.266581 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:58:13.639235 gimli2 1420650 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...   starting worker pid=1457585 on localhost:11719 at 05:58:14.165   2025-12-24 05:58:17.747804 gimli2 1420650 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.108 s.   2025-12-24 05:58:17.796478 gimli2 1420650 GPCERF estimate_gps INFO: Started estimating GPS values ...   2025-12-24 05:58:23.435733 gimli2 1420650 GPCERF find_optimal_nn INFO: Started finding optimal values ...   starting worker pid=1461182 on localhost:11719 at 05:58:23.837   2025-12-24 05:58:29.551028 gimli2 1420650 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 6.11199999999999 s.} ...   [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──   Expected `deriv_val[1, 1]` to equal 1.558466.   Differences:     `actual`: -1.0   `expected`: 1.6      ── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──   Expected `weights[37]` to equal 3.307249e-05.   Differences:     `actual`: -0.00011   `expected`: 0.00003      ── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──   Expected `gp_cerf[10]` to equal 2.105425.   Differences:     `actual`: -6.1   `expected`: 2.1      ── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────   Expected `weight$weight[28]` to equal 0.0002182767.   Differences:     `actual`: 0.00000   `expected`: 0.00022      ── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────   Expected `gps_m$gps[4, 1]` to equal 8.74310154.   Differences:     `actual`: 7.3   `expected`: 8.7      ── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──   Expected `val[10]` to equal 5.031225.   Differences:     `actual`: 5.067   `expected`: 5.031         [ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [77s/153s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR