• using R version 4.1.1 Patched (2021-09-15 r80903)
• using platform: x86_64-pc-linux-gnu (64-bit)
• using session charset: UTF-8
• checking for file ‘GOGANPA/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘GOGANPA’ version ‘1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘GOGANPA’ can be installed ... OK
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... NOTE
  Packages listed in more than one of Depends, Imports, Suggests, Enhances:
    ‘GANPA’ ‘WGCNA’
  A package should be listed in only one of these fields.
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... NOTE
  ‘library’ or ‘require’ calls to packages already attached by Depends:
    ‘GANPA’ ‘WGCNA’
    Please remove these calls from your code.
  Packages in Depends field not imported from:
    ‘GANPA’ ‘WGCNA’
    These packages need to be imported from (in the NAMESPACE file)
    for when this namespace is loaded but not attached.
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [31s/36s] NOTE
  GOGANPA: no visible global function definition for ‘GSE.Test.Main’
  selectRho: no visible global function definition for
    ‘scaleFreeFitIndex’
  Undefined global functions or variables:
    GSE.Test.Main scaleFreeFitIndex
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [95s/103s] OK
  Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
  GOGANPA 81.804 1.603 90.401
• checking PDF version of manual ... OK
• checking for non-standard things in the check directory ... NOTE
  Found the following files/directories:
    ‘GOGANPAResult.MeanAbs.MultiW.csv’ ‘GOGANPAResult.MeanAbs.NoW.csv’
    ‘GOGANPAResult.MeanAbs.OrigW.csv’
• DONE

Status: 4 NOTEs