- using R version 4.2.0 Patched (2022-05-23 r82396)
- using platform: x86_64-pc-linux-gnu (64-bit)
- using session charset: UTF-8
- checking for file ‘GOGANPA/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘GOGANPA’ version ‘1.0’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘GOGANPA’ can be installed ... OK
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... NOTE
Packages listed in more than one of Depends, Imports, Suggests, Enhances:
‘GANPA’ ‘WGCNA’
A package should be listed in only one of these fields.
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... NOTE
‘library’ or ‘require’ calls to packages already attached by Depends:
‘GANPA’ ‘WGCNA’
Please remove these calls from your code.
Packages in Depends field not imported from:
‘GANPA’ ‘WGCNA’
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [36s/42s] NOTE
GOGANPA: no visible global function definition for ‘GSE.Test.Main’
selectRho: no visible global function definition for
‘scaleFreeFitIndex’
Undefined global functions or variables:
GSE.Test.Main scaleFreeFitIndex
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [96s/107s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
GOGANPA 80.762 2.215 93.217
- checking PDF version of manual ... OK
- checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
‘GOGANPAResult.MeanAbs.MultiW.csv’ ‘GOGANPAResult.MeanAbs.NoW.csv’
‘GOGANPAResult.MeanAbs.OrigW.csv’
- DONE
Status: 4 NOTEs