* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘GHap’ ...
** package ‘GHap’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘GHap’
    finding HTML links ... done
    anc2plink                               html  
    ancmark                                 html  
    ancplot                                 html  
    ancsmooth                               html  
    ancsvm                                  html  
    finding level-2 HTML links ... done

    anctest                                 html  
    anctrain                                html  
    assoc                                   html  
    blockgen                                html  
    blockstats                              html  
    compress                                html  
    exfiles                                 html  
    fast2phase                              html  
    freq                                    html  
    froh                                    html  
    fst                                     html  
    getHinv                                 html  
    hap2plink                               html  
    haplotyping                             html  
    hapstats                                html  
    ibd                                     html  
    inbcoef                                 html  
    karyoplot                               html  
    kinship                                 html  
    lmm                                     html  
    loadhaplo                               html  
    loadphase                               html  
    loadplink                               html  
    makefile                                html  
    manhattan                               html  
    oxford2phase                            html  
    pedcheck                                html  
    phase2plink                             html  
    predictblup                             html  
    profile                                 html  
    relfind                                 html  
    remlci                                  html  
    roh                                     html  
    simadmix                                html  
    simmating                               html  
    simpheno                                html  
    slice                                   html  
    subset                                  html  
    varblup                                 html  
    vcf2phase                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GHap)