* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘GBJ’ ...
** package ‘GBJ’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpiF71xp/R.INSTALL2f3b9a63244334/GBJ/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ebb_crossprob_cor_R.cpp -o ebb_crossprob_cor_R.o
ebb_crossprob_cor_R.cpp: In function ‘double calc_qka(const int&, const int&, const int&, const std::vector<double>&, const std::vector<double>&, const bool&, const double&, const double&)’:
ebb_crossprob_cor_R.cpp:375:14: warning: unused variable ‘all_EBB_status’ [-Wunused-variable]
  375 |         bool all_EBB_status = eval_EBB_PMF_allN((d-k+1),
      |              ^~~~~~~~~~~~~~
ebb_crossprob_cor_R.cpp: In function ‘double calc_allq(const int&, const std::vector<double>&, const std::vector<double>&, const bool&)’:
ebb_crossprob_cor_R.cpp:453:10: warning: unused variable ‘filled_logftable’ [-Wunused-variable]
  453 |     bool filled_logftable = create_logftable(d,
      |          ^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o GBJ.so RcppExports.o ebb_crossprob_cor_R.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpiF71xp/R.INSTALL2f3b9a63244334/GBJ/src'
make[1]: Entering directory '/tmp/RtmpiF71xp/R.INSTALL2f3b9a63244334/GBJ/src'
make[1]: Leaving directory '/tmp/RtmpiF71xp/R.INSTALL2f3b9a63244334/GBJ/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-GBJ/00new/GBJ/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘GBJ’
    finding HTML links ... done
    BJ                                      html  
    FGFR2                                   html  
    GBJ                                     html  
    GBJ_objective                           html  
    GBJ_pvalue                              html  
    GHC                                     html  
    GHC_objective                           html  
    HC                                      html  
    OMNI_individual                         html  
    OMNI_ss                                 html  
    calc_score_stats                        html  
    calc_var_nonzero_mu                     html  
    ebb_loglik                              html  
    estimate_ss_cor                         html  
    gbr_pcs                                 html  
    herm_poly_diff_t                        html  
    minP                                    html  
    parse_input                             html  
    qnorm_mu                                html  
    score_stats_only                        html  
    surv                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (GBJ)