* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘FeNEU’ ... ** this is package ‘FeNEU’ version ‘3.0.2’ ** package ‘FeNEU’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘FeNEU’ finding HTML links ... done agg_ha_inc_main_stand_age_class html agg_ha_yt_inc_main_stand_age_class html apply_ytables html back_table_dclass html base_table_age_class html base_table_age_class_main_stand html base_table_d_q_class html base_table_d_q_class_main_stand html build_fcbestku html build_fdinvba html build_fdinvbhd html build_fdinvkrs html build_fdinvtot html build_fdvikrs html calc_v_hub_m3_at_thrsh html check_and_guess_species html check_circle_def_compatibility html check_pdf_dependencies html check_raw_data_BaySF html check_ytable_selection_vs_data html convert_numbers_with_commas html count_reg_points_by_plants_long html data_ex1_sample_raw html data_ex2_sample_raw html data_ex3_increment_interim html data_ex3_previous_sample_fe_inventory html data_ex3_sample_fe_inventory html data_ex3_trees_essentials html data_ex4_previous_sample_fe_inventory html data_ex4_sample_fe_inventory html data_ex5_previous_sample_fe_inventory html data_ex5_sample_fe_inventory html data_ex6_standwise_fe_inventory html data_ex7_standwise_fe_inventory html data_examples_overview html deadwood_add_essentials html detect_date_format html diagnose_pdf_toolchain html dot-assert_age_complete html dot-assert_output_dir html dot-breaks_from_cut_levels html dot-collective_file_tag html dot-coords_to_pre_metric html dot-derive_inventory_year html dot-detect_file_encoding html dot-drop_trees_without_coords html dot-drop_trees_without_layer html dot-gnfi3_overview_core html dot-increment_bundle_trees html dot-increment_method_tag html dot-missing_coords_msg html dot-null_partial_positions html dot-parse_numeric_cols html dot-parse_numeric_vec html dot-plot_id_duplicate_msg html dot-read_delim_auto html dot-safe_filename_part html dot-species_map_report html dot-table_pdf_meta html dot-tree_ident_label html dot-warn_if_not_sample_inventory html dot-ytables_overview_from_cohorts html dq_hq_perclass html fe_ccircle_fromlist html fe_crs_registry html fe_inventory html fe_normalise_coordinates html fe_stand_fromlist html fill_heights_back html generate_circle_definition html get_inv_year html ha_inc_main_stand_age_class html harmonize_inv_for_repsurv html height_complete_inventory html import_data_BaySF_inraw html import_deadwood_data_baysf html import_sample_concentric_format1_raw_to_pre html import_sample_concentric_format2_raw_to_pre html import_sample_concentric_pre_to_fe_inventory html import_standwise_relascope_format1_metadata html import_standwise_relascope_format1_raw_to_pre html import_standwise_relascope_format1_stand_register_bundle html import_standwise_relascope_pre_to_fe_inventory html inc_sub10_rep_classic html inc_sub10_rep_end html inc_sub10_rep_mean html inc_sub10_rep_trans html increment_base_table html increment_base_table_main_stand html increment_ytables_base_table html inv_inc_big_overview html inv_inc_big_overview_2nd_only html inv_inc_big_overview_matches_only html inv_inc_fill_backward_implausible html inv_inc_fill_backward_reptrees html inv_inc_fill_gaps_backward html inv_inc_fill_gaps_backward_nomatch html inv_inc_fill_gaps_forward html inv_inc_fill_gaps_gnfi3 html inv_inc_summaric html inv_inc_tree_2_plot html inv_inc_tree_consolidate html inv_inc_tree_extend html inv_inc_tree_extend_combined html inv_inc_tree_extend_single html inv_increment_gnfi3 html inv_increment_gnfi_2012 html inv_increment_repeated_survey html inv_increment_repsurv_ccirc html inv_increment_repsurv_ccirc_check_input html inv_increment_ytables html inv_period html inv_point_checks html inventory_meta html is_fe_increment_gnfi3 html is_fe_increment_repsurv html is_fe_increment_ytables html is_fe_inventory html match_2_inventories html match_2_inventories_by_center_coord html match_2_inventories_by_plot_id html match_plot_statistics html match_tree_statistics html match_trees_on_inventory_repsurv_ccirc html match_trees_on_plot_repsurv_ccirc html missing_checks html new_fe_inventory html output_base_table html output_base_table_pdf html output_increment_base_table html output_increment_base_table_pdf html output_increment_overall html output_increment_overall_pdf html output_increment_overview_gnfi3 html output_increment_overview_gnfi3_pdf html output_increment_overview_ytables_pdf html output_structure_table html output_structure_table_pdf html pdf_dependencies html plot_agg_for_yt html plot_inc_gnfi_2012 html plot_info_sheet_pdf html print.fe_increment_gnfi3 html print.fe_increment_repsurv html print.fe_increment_ytables html processed_heights_bav_sub10 html processed_heights_nfi_sub10 html processed_pulled_sub10 html pull_centers html pull_circle_definitions html pull_sums html pull_trees html read_and_convert_data html read_deadwood_data_baysf html reclassify_pseudo_ingrowth_ccirc html reg_points_by_plants_wide html regeneration_add_essentials html rename_dead_wood_fdinvtot html se_area_weighted html se_area_weighted_grouped html setup_pdf_toolchain html single_dead_tree_aggregation html single_regeneration_aggregation html single_tree_aggregation html small_circle_geometry html stand_register_pdf html structure_deadwood_output_table html structure_deadwood_output_table_pdf html structure_regeneration_output_table html structure_regeneration_output_table_pdf html structure_regeneration_output_wide html structure_table_age_class html structure_table_age_class_main_stand html structure_table_d_q_class html structure_table_d_q_class_main_stand html structure_table_deadwood_dclass html tree_inc_gnfi_2012 html tree_inc_repsurv html trees_add_essentials html validate_fe_inventory html ytables_bavrn_state_var_1_feneu html *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FeNEU)