Install log for 'FLSSS'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘FLSSS’ ...
** package ‘FLSSS’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E
checking for gcc... gcc-13
checking whether we are using the GNU C compiler... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to accept ISO C89... none needed
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++-13 -std=gnu++17 accepts -g... (cached) yes
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gmp.h usability... yes
checking gmp.h presence... yes
checking for gmp.h... yes
checking for __gmpz_init in -lgmp... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpQRCWBE/R.INSTALL3d6b55762f0d0c/FLSSS/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c BaB01kp.cpp -o BaB01kp.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c BaBgapMulthreadKPs.cpp -o BaBgapMulthreadKPs.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c BaBgapMulthreadNodes.cpp -o BaBgapMulthreadNodes.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DP01kp.cpp -o DP01kp.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DPgapMultithreadKPs.cpp -o DPgapMultithreadKPs.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c DPgapMultithreadNodes.cpp -o DPgapMultithreadNodes.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GAP.cpp -o GAP.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c GAgap.cpp -o GAgap.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Gknapsack.cpp -o Gknapsack.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c findBoundInterface.cpp -o findBoundInterface.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c flsss.cpp -o flsss.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c flsssVariableTree.cpp -o flsssVariableTree.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mflsss.cpp -o mflsss.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mflsssArb.cpp -o mflsssArb.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /usr/include/c++/13/bits/specfun.h:43,
                 from /usr/include/c++/13/cmath:3699,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/platform/compiler.h:100,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp/r/headers.h:62,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/RcppCommon.h:30,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include/Rcpp.h:27,
                 from arbitraryDimFLSSS/mflsssDecomp.hpp:4,
                 from mflsssArb.cpp:3:
In function ‘typename __gnu_cxx::__enable_if<std::__is_scalar<_Tp>::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = unsigned int*; _Tp = int]’,
    inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = unsigned int*; _Tp = int]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21,
    inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = unsigned int*; _Tp = int]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20,
    inlined from ‘void mulHint32(uint32_t*, int, uint32_t*, int, uint32_t*, int)’ at arbitraryDimFLSSS/arithmetic.hpp:39:12,
    inlined from ‘void AdjustStringVec::bitIntsToHugeInts64(std::vector<long unsigned int>&, std::vector<int>&)’ at arbitraryDimFLSSS/intString2intArray.hpp:319:16:
/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744073441116164 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
  931 |         *__first = __tmp;
      |         ~~~~~~~~~^~~~~~~
In function ‘typename __gnu_cxx::__enable_if<std::__is_scalar<_Tp>::__value, void>::__type std::__fill_a1(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = unsigned int*; _Tp = int]’,
    inlined from ‘void std::__fill_a(_FIte, _FIte, const _Tp&) [with _FIte = unsigned int*; _Tp = int]’ at /usr/include/c++/13/bits/stl_algobase.h:977:21,
    inlined from ‘void std::fill(_ForwardIterator, _ForwardIterator, const _Tp&) [with _ForwardIterator = unsigned int*; _Tp = int]’ at /usr/include/c++/13/bits/stl_algobase.h:1007:20,
    inlined from ‘void mulHint32(uint32_t*, int, uint32_t*, int, uint32_t*, int)’ at arbitraryDimFLSSS/arithmetic.hpp:39:12,
    inlined from ‘void AdjustStringVec::bitIntsToHugeInts64(std::vector<long unsigned int>&, std::vector<int>&)’ at arbitraryDimFLSSS/intString2intArray.hpp:323:16:
/usr/include/c++/13/bits/stl_algobase.h:931:18: warning: ‘void* __builtin_memset(void*, int, long unsigned int)’ specified bound between 18446744073441116164 and 18446744073709551612 exceeds maximum object size 9223372036854775807 [-Wstringop-overflow=]
  931 |         *__first = __tmp;
      |         ~~~~~~~~~^~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mflsssComoPar.cpp -o mflsssComoPar.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mflsssDecomp.cpp -o mflsssDecomp.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mflsssVariableTree.cpp -o mflsssVariableTree.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppParallel/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I. -DGMP -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DR_BUILD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c testIntegerize.cpp -o testIntegerize.o
cc1plus: warning: command-line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o FLSSS.so BaB01kp.o BaBgapMulthreadKPs.o BaBgapMulthreadNodes.o DP01kp.o DPgapMultithreadKPs.o DPgapMultithreadNodes.o GAP.o GAgap.o Gknapsack.o RcppExports.o findBoundInterface.o flsss.o flsssVariableTree.o mflsss.o mflsssArb.o mflsssComoPar.o mflsssDecomp.o mflsssVariableTree.o testIntegerize.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lgmp -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQRCWBE/R.INSTALL3d6b55762f0d0c/FLSSS/src'
make[1]: Entering directory '/tmp/RtmpQRCWBE/R.INSTALL3d6b55762f0d0c/FLSSS/src'
make[1]: Leaving directory '/tmp/RtmpQRCWBE/R.INSTALL3d6b55762f0d0c/FLSSS/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-FLSSS/00new/FLSSS/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘FLSSS’
    finding HTML links ... done
    FLSSS                                   html  
    FLSSSmultiset                           html  
    GAP                                     html  
    addNumStrings                           html  
    arbFLSSS                                html  
    arbFLSSSobjRun                          html  
    auxGAPbb                                html  
    auxGAPbbDp                              html  
    auxGAPga                                html  
    auxKnapsack01bb                         html  
    auxKnapsack01dp                         html  
    decomposeArbFLSSS                       html  
    decomposeMflsss                         html  
    ksumHash                                html  
    mFLSSSobjRun                            html  
    mFLSSSpar                               html  
    mFLSSSparImposeBounds                   html  
    mFLSSSparImposeBoundsIntegerized        html  
    mFLSSSparIntegerized                    html  
    mmKnapsack                              html  
    mmKnapsackIntegerized                   html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (FLSSS)