* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘EpiEstim’ ...
** this is package ‘EpiEstim’ version ‘2.2-5’
** package ‘EpiEstim’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘EpiEstim’
    finding HTML links ... done
    DiscrSI                                 html  
    EstimateR                               html  
    Flu1918                                 html  
    Flu2009                                 html  
    Measles1861                             html  
    MockRotavirus                           html  
    OverallInfectivity                      html  
    SARS2003                                html  
    Smallpox1972                            html  
    WT                                      html  
    check_cdt_samples_convergence           html  
    coarse2estim                            html  
    discr_si                                html  
    estimate_R                              html  
    estimate_R_plots                        html  
    flu_2009_NYC_school                     html  
    init_mcmc_params                        html  
    make_config                             html  
    make_mcmc_control                       html  
    mers_2014_15                            html  
    overall_infectivity                     html  
    plot.estimate_R                         html  
    sample_posterior_R                      html  
    wallinga_teunis                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EpiEstim)