* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘EmbedSOM’ ...
** this is package ‘EmbedSOM’ version ‘2.2’
** package ‘EmbedSOM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfVFSzl/R.INSTALL3b286b1cfedcd9/EmbedSOM/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c embed.cpp -o embed.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c som.cpp -o som.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o EmbedSOM.so embed.o som.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfVFSzl/R.INSTALL3b286b1cfedcd9/EmbedSOM/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpfVFSzl/R.INSTALL3b286b1cfedcd9/EmbedSOM/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpfVFSzl/R.INSTALL3b286b1cfedcd9/EmbedSOM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-EmbedSOM/00new/EmbedSOM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘EmbedSOM’
    finding HTML links ... done
    ClusterPalette                          html  
    EmbedSOM                                html  
    ExprColors                              html  
    ExpressionGradient                      html  
    ExpressionPalette                       html  
    GQTSOM                                  html  
    GraphCoords                             html  
    Initialize_PCA                          html  
    MSTCoords                               html  
    MapDataToCodes                          html  
    NormalizeColor                          html  
    PlotData                                html  
    PlotDefault                             html  
    PlotEmbed                               html  
    PlotGG                                  html  
    PlotId                                  html  
    RandomMap                               html  
    SOM                                     html  
    UMAPCoords                              html  
    UMatrixCoords                           html  
    kMeansMap                               html  
    kNNCoords                               html  
    tSNECoords                              html  
    uwotCoords                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EmbedSOM)