* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘ELAplus’ ...
** this is package ‘ELAplus’ version ‘1.0.2’
** package ‘ELAplus’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-17) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvVimvg/R.INSTALL2fe6f653ba7c6a/ELAplus/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ELA_functions.cpp -o ELA_functions.o
ELA_functions.cpp: In function ‘arma::mat SA(const arma::mat&, const double&, const int&, bool, bool, const double&, const int&, const double&, const double&)’:
ELA_functions.cpp:129:7: warning: unused variable ‘total_tt’ [-Wunused-variable]
129 | int total_tt = 0;
| ^~~~~~~~
ELA_functions.cpp:132:10: warning: unused variable ‘minu’ [-Wunused-variable]
132 | double minu = std::numeric_limits<double>::infinity();
| ^~~~
ELA_functions.cpp:150:10: warning: unused variable ‘upd’ [-Wunused-variable]
150 | double upd;
| ^~~
ELA_functions.cpp: In function ‘arma::mat fullSA(const arma::mat&, const arma::mat&, bool, bool, const double&, const int&, const double&, const int&, const double&, const double&)’:
ELA_functions.cpp:333:10: warning: unused variable ‘minu’ [-Wunused-variable]
333 | double minu = std::numeric_limits<double>::infinity();
| ^~~~
ELA_functions.cpp: In function ‘int convDec(arma::rowvec)’:
ELA_functions.cpp:697:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
697 | for(int i=0; i< v.n_elem; i++){
| ~^~~~~~~~~~
ELA_functions.cpp: In function ‘std::string convStr(const arma::rowvec&)’:
ELA_functions.cpp:710:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
710 | for(int i=0; i< v.n_elem; i++){
| ~^~~~~~~~~~
ELA_functions.cpp: In function ‘arma::mat SSentropy_cpp(arma::mat, arma::mat, arma::rowvec, arma::mat, int, int)’:
ELA_functions.cpp:758:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
758 | for(int i=0; i < uoc.n_rows; i++){
| ~~^~~~~~~~~~~~
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
RcppExports.cpp:54:15: warning: inline function ‘double cEnergy(const arma::rowvec&, const arma::rowvec&, const arma::mat&)’ used but never defined
54 | inline double cEnergy(const arma::rowvec& state, const arma::rowvec& alpha, const arma::mat& beta);
| ^~~~~~~
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o ELAplus.so ELA_functions.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvVimvg/R.INSTALL2fe6f653ba7c6a/ELAplus/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpvVimvg/R.INSTALL2fe6f653ba7c6a/ELAplus/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpvVimvg/R.INSTALL2fe6f653ba7c6a/ELAplus/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-ELAplus/00new/ELAplus/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘ELAplus’
finding HTML links ... done
Bi html
DisconnectivityGraph html
ELA html
ELAplus-package html
ELPruning html
Energy html
Findbp html
Formatting html
GELAObj html
GradELA html
GradientDescent html
HeatBath html
MinTippingPath html
OnestepHBS html
PCplot html
SSentropy html
Stability html
SteepestDescent html
baseabtable html
basemetadata html
bin2id html
bootstrap_ELA html
bootstrap_SA html
deltaE_histogram html
gStability html
hb.paramgen html
id2bin html
plotSAtest html
runSA html
sa2params html
saEndpoint html
showDG html
showGELA3D html
showIntrGraph html
showSSD html
showSSD_ggplot html
sstable html
tptable html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ELAplus)