* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘EGAnet’ ...
** package ‘EGAnet’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpyc6TBg/R.INSTALL1add1d3729e70a/EGAnet/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modularity.c -o modularity.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nanotime.c -o nanotime.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polychoric_matrix.c -o polychoric_matrix.o
polychoric_matrix.c: In function ‘thresholds’:
polychoric_matrix.c:337:35: warning: argument 1 range [18446744071562067968, 18446744073709551615] exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=]
337 | double* frequency_X = (double*) calloc(cat_X, sizeof(double));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from polychoric_matrix.c:20:
/usr/include/stdlib.h:556:14: note: in a call to allocation function ‘calloc’ declared here
556 | extern void *calloc (size_t __nmemb, size_t __size)
| ^~~~~~
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c signed_modularity.c -o signed_modularity.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xoshiro.c -o xoshiro.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ziggurat.c -o ziggurat.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o EGAnet.so init.o modularity.o nanotime.o polychoric_matrix.o signed_modularity.o xoshiro.o ziggurat.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpyc6TBg/R.INSTALL1add1d3729e70a/EGAnet/src'
make[1]: Entering directory '/tmp/Rtmpyc6TBg/R.INSTALL1add1d3729e70a/EGAnet/src'
make[1]: Leaving directory '/tmp/Rtmpyc6TBg/R.INSTALL1add1d3729e70a/EGAnet/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-EGAnet/00new/EGAnet/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘EGAnet’
finding HTML links ... done
CFA html
EBICglasso.qgraph html
finding level-2 HTML links ... done
EGA html
EGA.estimate html
EGA.fit html
EGAnet-package html
EGAnet-plot html
Embed html
LCT html
TMFG html
UVA html
auto.correlate html
boot.ergoInfo html
boot.wmt html
bootEGA html
color_palette_EGA html
community.compare html
community.consensus html
community.detection html
community.homogenize html
community.unidimensional html
compare.EGA.plots html
convert2igraph html
convert2tidygraph html
depression html
dimensionStability html
dnn.weights html
dynEGA html
dynEGA.ind.pop html
ega.wmt html
entropyFit html
ergoInfo html
genTEFI html
glla html
hierEGA html
igraph2matrix html
infoCluster html
intelligenceBattery html
invariance html
itemStability html
jsd html
modularity html
net.loads html
net.scores html
network.estimation html
network.generalizability html
network.predictability html
optimism html
polychoric.matrix html
prime.num html
riEGA html
sim.dynEGA html
simDFM html
tefi html
totalCor html
totalCorMat html
vn.entropy html
wmt2 html
wto html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (EGAnet)