• using R version 4.5.1 Patched (2025-06-30 r88369)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux 13 (trixie)
• using session charset: UTF-8
• checking for file ‘ECOTOXr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ECOTOXr’ version ‘1.2.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘ECOTOXr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/20s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking R/sysdata.rda ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [7s/9s] OK Examples with CPU (user + system) or elapsed time > 5s                      user system elapsed build_ecotox_sqlite 4.381 0.133 5.955
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [14s/17s] OK   Running ‘testthat.R’ [14s/16s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [14s/205s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘ecotox-schema.Rmd’ using rmarkdown --- finished re-building ‘ecotox-schema.Rmd’ --- re-building ‘reproducibility.Rmd’ using rmarkdown --- finished re-building ‘reproducibility.Rmd’ --- re-building ‘sanitising-ecotox.Rmd’ using rmarkdown --- finished re-building ‘sanitising-ecotox.Rmd’ --- re-building ‘searching-ecotox.Rmd’ using rmarkdown Quitting from searching-ecotox.Rmd:99-112 [unnamed-chunk-6] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ NULL ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'searching-ecotox.Rmd' failed with diagnostics: Failed to perform HTTP request. Caused by error in `curl::curl_fetch_memory()`: ! Failure when receiving data from the peer [cfpub.epa.gov]: Recv failure: Connection reset by peer --- failed re-building ‘searching-ecotox.Rmd’ SUMMARY: processing the following file failed:   ‘searching-ecotox.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/3s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR