Install log for 'DR.SC'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘DR.SC’ ...
** package ‘DR.SC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpAxQ9HQ/R.INSTALL12cca02578e71d/DR.SC/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c getNB_fast.cpp -o getNB_fast.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mt_paral_job.cpp -o mt_paral_job.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mt_paral_job2.cpp -o mt_paral_job2.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c simulDRcluster_main.cpp -o simulDRcluster_main.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c utilSimulDRcluster.cpp -o utilSimulDRcluster.o
utilSimulDRcluster.cpp: In function ‘void multi_det_SkCpp2(const arma::mat&, const arma::vec&, const arma::mat&, const arma::mat&, arma::rowvec, const arma::mat&, double&, arma::vec&)’:
utilSimulDRcluster.cpp:48:21: warning: unused variable ‘q’ [-Wunused-variable]
   48 |   int n = X.n_rows, q = W0.n_cols;
      |                     ^
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DARMA_64BIT_WORD -fpic  -g -O2 -Wall -pedantic -mtune=native   -c wpca.cpp -o wpca.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o DR.SC.so RcppExports.o getNB_fast.o mt_paral_job.o mt_paral_job2.o simulDRcluster_main.o utilSimulDRcluster.o wpca.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpAxQ9HQ/R.INSTALL12cca02578e71d/DR.SC/src'
make[1]: Entering directory '/tmp/RtmpAxQ9HQ/R.INSTALL12cca02578e71d/DR.SC/src'
make[1]: Leaving directory '/tmp/RtmpAxQ9HQ/R.INSTALL12cca02578e71d/DR.SC/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-DR.SC/00new/DR.SC/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘DR.SC’
    finding HTML links ... done
    DR.SC                                   html  
    finding level-2 HTML links ... done

    DR.SC.fit                               html  
    FindSVGs                                html  
    HCC1                                    html  
    RunWPCA                                 html  
    drscPlot                                html  
    genspatialdata                          html  
    getAdj                                  html  
    getAdj_auto                             html  
    getAdj_manual                           html  
    getneighborhood_fast                    html  
    mbicPlot                                html  
    read10XVisium                           html  
    readscRNAseq                            html  
    selectModel                             html  
    sp_means_Rcpp                           html  
    sp_sums_Rcpp                            html  
    spatialPlotClusters                     html  
    topSVGs                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DR.SC)