* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘DPP’ ... ** package ‘DPP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’ using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXpUguZ/R.INSTALL1dacba5113926b/DPP/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c DPPmcmc.cpp -o DPPmcmc.o DPPmcmc.cpp: In member function ‘void DPPmcmc::allocationProposal(int)’: DPPmcmc.cpp:824:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 824 | for(int i=0;i<these_categories_are_empty.size();i++) { | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ DPPmcmc.cpp: In member function ‘std::vector<int> DPPmcmc::evaluateVectorGreaterThanInt(std::vector<int>, int)’: DPPmcmc.cpp:973:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 973 | for(int i=0;i<vector1.size();i++){ | ~^~~~~~~~~~~~~~~ In file included from DPPmcmc.cpp:4: helper.h: In instantiation of ‘T sumVector(std::vector<T>) [with T = double]’: DPPmcmc.cpp:118:23: required from here 118 | likelihood=sumVector(likelihood_vector); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~ helper.h:68:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 68 | for(int i=0;i<vector1.size();i++) | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> concatenateVectors(std::vector<T>, std::vector<T>) [with T = double]’: DPPmcmc.cpp:414:44: required from here 414 | likelihood_trace=concatenateVectors(likelihood_trace,emptyDoubleVector); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:83:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 83 | for (int i=0;i<vector2.size();i++){ | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> concatenateVectors(std::vector<T>, std::vector<T>) [with T = int]’: DPPmcmc.cpp:415:42: required from here 415 | num_cats_trace=concatenateVectors(num_cats_trace,emptyIntegerVector); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:83:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 83 | for (int i=0;i<vector2.size();i++){ | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<double> divideVectorByDouble(std::vector<T>, double) [with T = double]’: DPPmcmc.cpp:713:24: required from here 713 | divideVectorByDouble(rep(concentration_parameter,num_auxiliary_tables), (num_auxiliary_tables * (concentration_parameter + num_elements - 1))); | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:21:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 21 | for(int i=0;i<vector1.size();i++){ | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> logVector(std::vector<T>) [with T = double]’: DPPmcmc.cpp:714:40: required from here 714 | std::vector<double> priors=logVector(concatenateVectors(existing_priors,augmented_priors)); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:47:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 47 | for(int i=0;i<vector1.size();i++) | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> expVector(std::vector<T>) [with T = double]’: DPPmcmc.cpp:717:47: required from here 717 | std::vector<double> category_probs=expVector(category_likelihoods+priors); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:58:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 58 | for(int i=0;i<vector1.size();i++) | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘bool anyEqual(std::vector<T>, double) [with T = double]’: DPPmcmc.cpp:814:15: required from here 814 | if (anyEqual(makeIntegerVectorStandardDoubleVector(num_elements_in_each_category),0.0)){ | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:116:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 116 | for(int i=0;i<vector1.size();i++){ | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> whichAreEqual(std::vector<T>, T) [with T = double]’: DPPmcmc.cpp:820:66: required from here 820 | std::vector<double> these_categories_are_empty=whichAreEqual(makeIntegerVectorStandardDoubleVector(num_elements_in_each_category),0.0); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:35:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 35 | for(int i=0;i<vector1.size();i++){ | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> removeElementAtPosition(std::vector<T>, int) [with T = double]’: DPPmcmc.cpp:844:43: required from here 844 | old_params1=removeElementAtPosition(old_params1,c); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ helper.h:128:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | for(int i=0;i<vector1.size();i++){ | ~^~~~~~~~~~~~~~~ helper.h: In instantiation of ‘std::vector<T> removeElementAtPosition(std::vector<T>, int) [with T = int]’: DPPmcmc.cpp:856:62: required from here 856 | num_elements_in_each_category=removeElementAtPosition(makeIntegerVectorStandardIntVector(num_elements_in_each_category),c); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ helper.h:128:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<int>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 128 | for(int i=0;i<vector1.size();i++){ | ~^~~~~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Distribution.cpp -o Distribution.o Distribution.cpp: In member function ‘int Normal::sample_int_prob(std::vector<double>)’: Distribution.cpp:133:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 133 | for(int i=1;i<probs.size();i++){ | ~^~~~~~~~~~~~~ Distribution.cpp:141:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 141 | for(int i=0;i<limits.size();i++){ | ~^~~~~~~~~~~~~~ Distribution.cpp: In member function ‘virtual double Degenerate::lnProb(std::vector<double>)’: Distribution.cpp:493:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare] 493 | for(int i = 0; i < val.size(); ++i) { | ~~^~~~~~~~~~~~ g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c model.cpp -o model.o gcc-14 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c registerDynamicSymbols.c -o registerDynamicSymbols.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o DPP.so DPPmcmc.o Distribution.o RcppExports.o model.o registerDynamicSymbols.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXpUguZ/R.INSTALL1dacba5113926b/DPP/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXpUguZ/R.INSTALL1dacba5113926b/DPP/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXpUguZ/R.INSTALL1dacba5113926b/DPP/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-DPP/00new/DPP/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘DPP’ finding HTML links ... done DPP-package html GammaModel-class html NormalModel-class html dppMCMC_C html expectedNumberOfClusters html simulateChineseRestaurant html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DPP)