Install log for 'DEploid.utils'

* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘DEploid.utils’ ...
** this is package ‘DEploid.utils’ version ‘0.0.1’
** package ‘DEploid.utils’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjcuOxt/R.INSTALL95beb29734240/DEploid.utils/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rvcf.cpp -o rvcf.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vcf/txtReader.cpp -o vcf/txtReader.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vcf/variantIndex.cpp -o vcf/variantIndex.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vcf/vcfReader.cpp -o vcf/vcfReader.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vcf/gzstream/gzstream.cpp -o vcf/gzstream/gzstream.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I/usr/share/R/include/ -Ivcf/ -Ivcf/gzstream/ -DVERSION="\"R\"" -DRBUILD -DSTRICT_R_HEADERS -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vcf/vcfReaderDebug.cpp -o vcf/vcfReaderDebug.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o DEploid.utils.so rvcf.o RcppExports.o vcf/txtReader.o vcf/variantIndex.o vcf/vcfReader.o vcf/gzstream/gzstream.o vcf/vcfReaderDebug.o -lz -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjcuOxt/R.INSTALL95beb29734240/DEploid.utils/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjcuOxt/R.INSTALL95beb29734240/DEploid.utils/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjcuOxt/R.INSTALL95beb29734240/DEploid.utils/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-DEploid.utils/00new/DEploid.utils/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘DEploid.utils’
    finding HTML links ... done
    DEploid.utils-package                   html  
    computeObsWSAF                          html  
    extractCoverageFromTxt                  html  
    extractCoverageFromVcf                  html  
    extractPLAF                             html  
    haplotypePainter                        html  
    histWSAF                                html  
    plotAltVsRef                            html  
    plotObsExpWSAF                          html  
    plotProportions                         html  
    plotWSAFvsPLAF                          html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DEploid.utils)