* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘DAISIEprep’ ...
** this is package ‘DAISIEprep’ version ‘1.0.1’
** package ‘DAISIEprep’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘DAISIEprep’
    finding HTML links ... done
    DAISIEprep-package                      html  
    GalapagosTrees                          html  
    Island_colonist-accessors               html  
    Island_colonist-class                   html  
    Island_tbl-accessors                    html  
    Island_tbl-class                        html  
    Multi_island_tbl-class                  html  
    add_asr_node_states                     html  
    add_island_colonist                     html  
    add_missing_species                     html  
    add_multi_missing_species               html  
    add_outgroup                            html  
    all_descendants_conspecific             html  
    all_endemicity_status                   html  
    any_back_colonisation                   html  
    any_outgroup                            html  
    any_polyphyly                           html  
    as_daisie_datatable                     html  
    benchmark                               html  
    bind_colonist_to_tbl                    html  
    check_island_colonist                   html  
    check_island_tbl                        html  
    check_multi_island_tbl                  html  
    check_phylo_data                        html  
    coccyzus_phylod                         html  
    columbiformes_phylod                    html  
    count_missing_species                   html  
    create_daisie_data                      html  
    create_endemicity_status                html  
    create_test_phylod                      html  
    default_params_doc                      html  
    endemicity_to_sse_states                html  
    extract_asr_clade                       html  
    extract_biogeobears_ancestral_states_probs
                                            html  
    extract_clade_name                      html  
    extract_endemic_clade                   html  
    extract_endemic_singleton               html  
    extract_island_species                  html  
    extract_multi_tip_species               html  
    extract_nonendemic                      html  
    extract_nonendemic_forced               html  
    extract_species_asr                     html  
    extract_species_min                     html  
    extract_stem_age                        html  
    extract_stem_age_asr                    html  
    extract_stem_age_genus                  html  
    extract_stem_age_min                    html  
    finches_phylod                          html  
    get_endemic_species                     html  
    get_sse_tip_states                      html  
    is_back_colonisation                    html  
    is_duplicate_colonist                   html  
    is_identical_island_tbl                 html  
    is_multi_tip_species                    html  
    island_colonist                         html  
    island_tbl                              html  
    mimus_phylod                            html  
    multi_extract_island_species            html  
    multi_island_tbl                        html  
    myiarchus_phylod                        html  
    plant_phylo                             html  
    plot_colonisation                       html  
    plot_performance                        html  
    plot_phylod                             html  
    plot_sensitivity                        html  
    progne_phylod                           html  
    pyrocephalus_phylod                     html  
    read_performance                        html  
    read_sensitivity                        html  
    rm_duplicate_island_species             html  
    rm_island_colonist                      html  
    rm_multi_missing_species                html  
    round_up                                html  
    select_endemicity_status                html  
    sensitivity                             html  
    setophaga_phylod                        html  
    sse_states_to_endemicity                html  
    translate_status                        html  
    unique_island_genera                    html  
    write_biogeobears_input                 html  
    write_newick_file                       html  
    write_phylip_biogeo_file                html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DAISIEprep)