* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’ * installing *source* package ‘Coxmos’ ... ** this is package ‘Coxmos’ version ‘1.1.3’ ** package ‘Coxmos’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Coxmos_init.c -o Coxmos_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c condSURV_init.c -o condSURV_init.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survivalBIV.c -o survivalBIV.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Coxmos.so Coxmos_init.o condSURV_init.o survivalBIV.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src' make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src' installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Coxmos/00new/Coxmos/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package ‘Coxmos’ finding HTML links ... done Beran html CV html Csurv html NR html PI html RocFun html X_multiomic html X_proteomic html Y_multiomic html Y_proteomic html cenROC html cox html cox.prediction html coxEN html coxSW html coxmos html cv.coxEN html cv.coxmos html cv.isb.splsdacox html cv.isb.splsdrcox html cv.isb.splsdrcox_penalty html cv.isb.splsicox html cv.mb.coxmos html cv.mb.splsdacox html cv.mb.splsdrcox html cv.sb.splsdacox html cv.sb.splsdrcox html cv.sb.splsdrcox_penalty html cv.sb.splsicox html cv.splsdacox html cv.splsdrcox html cv.splsdrcox_penalty html cv.splsicox html deleteNearZeroCoefficientOfVariation html deleteNearZeroCoefficientOfVariation.mb html deleteZeroOrNearZeroVariance html deleteZeroOrNearZeroVariance.mb html dnorkernel html eval_Coxmos_model_per_variable html eval_Coxmos_model_per_variable.list html eval_Coxmos_models html factorToBinary html getAutoKM html getAutoKM.list html getCutoffAutoKM html getCutoffAutoKM.list html getDesign.MB html getEPV html getEPV.mb html getTestKM html getTestKM.list html getTrainTest html integ html isb.splsdacox html isb.splsdrcox html isb.splsdrcox_penalty html isb.splsicox html ker_dis_i html kfunc html kfunction html loadingplot.Coxmos html loadingplot.fromVector.Coxmos html mb.coxmos html mb.splsdacox html mb.splsdrcox html muro html norm01 html plot_Coxmos.MB.PLS.model html plot_Coxmos.PLS.model html plot_cox.event html plot_cox.event.list html plot_divergent.biplot html plot_evaluation html plot_evaluation.list html plot_events html plot_forest html plot_forest.list html plot_multipleObservations.LP html plot_multipleObservations.LP.list html plot_observation.eventDensity html plot_observation.eventHistogram html plot_observation.pseudobeta html plot_observation.pseudobeta.list html plot_proportionalHazard html plot_proportionalHazard.list html plot_pseudobeta html plot_pseudobeta.list html plot_sPLS_Coxmos html plot_time.list html predict.Coxmos html print.Coxmos html save_ggplot html save_ggplot_lst html sb.splsdacox html sb.splsdrcox html sb.splsdrcox_penalty html sb.splsicox html splsdacox html splsdrcox html splsdrcox_penalty html splsicox html w.starplot.Coxmos html wIQR html wbw html wquantile html wvar html ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Coxmos)