* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Coxmos’ ...
** this is package ‘Coxmos’ version ‘1.1.3’
** package ‘Coxmos’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7j1uo3/R.INSTALLb188832d2b80a/Coxmos/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Coxmos_init.c -o Coxmos_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c condSURV_init.c -o condSURV_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survivalBIV.c -o survivalBIV.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Coxmos.so Coxmos_init.o condSURV_init.o survivalBIV.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7j1uo3/R.INSTALLb188832d2b80a/Coxmos/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp7j1uo3/R.INSTALLb188832d2b80a/Coxmos/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp7j1uo3/R.INSTALLb188832d2b80a/Coxmos/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Coxmos/00new/Coxmos/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Coxmos’
finding HTML links ... done
Beran html
CV html
Csurv html
NR html
PI html
RocFun html
X_multiomic html
X_proteomic html
Y_multiomic html
Y_proteomic html
cenROC html
cox html
cox.prediction html
coxEN html
coxSW html
coxmos html
cv.coxEN html
cv.coxmos html
cv.isb.splsdacox html
cv.isb.splsdrcox html
cv.isb.splsdrcox_penalty html
cv.isb.splsicox html
cv.mb.coxmos html
cv.mb.splsdacox html
cv.mb.splsdrcox html
cv.sb.splsdacox html
cv.sb.splsdrcox html
cv.sb.splsdrcox_penalty html
cv.sb.splsicox html
cv.splsdacox html
cv.splsdrcox html
cv.splsdrcox_penalty html
cv.splsicox html
deleteNearZeroCoefficientOfVariation html
deleteNearZeroCoefficientOfVariation.mb
html
deleteZeroOrNearZeroVariance html
deleteZeroOrNearZeroVariance.mb html
dnorkernel html
eval_Coxmos_model_per_variable html
eval_Coxmos_model_per_variable.list html
eval_Coxmos_models html
factorToBinary html
getAutoKM html
getAutoKM.list html
getCutoffAutoKM html
getCutoffAutoKM.list html
getDesign.MB html
getEPV html
getEPV.mb html
getTestKM html
getTestKM.list html
getTrainTest html
integ html
isb.splsdacox html
isb.splsdrcox html
isb.splsdrcox_penalty html
isb.splsicox html
ker_dis_i html
kfunc html
kfunction html
loadingplot.Coxmos html
loadingplot.fromVector.Coxmos html
mb.coxmos html
mb.splsdacox html
mb.splsdrcox html
muro html
norm01 html
plot_Coxmos.MB.PLS.model html
plot_Coxmos.PLS.model html
plot_cox.event html
plot_cox.event.list html
plot_divergent.biplot html
plot_evaluation html
plot_evaluation.list html
plot_events html
plot_forest html
plot_forest.list html
plot_multipleObservations.LP html
plot_multipleObservations.LP.list html
plot_observation.eventDensity html
plot_observation.eventHistogram html
plot_observation.pseudobeta html
plot_observation.pseudobeta.list html
plot_proportionalHazard html
plot_proportionalHazard.list html
plot_pseudobeta html
plot_pseudobeta.list html
plot_sPLS_Coxmos html
plot_time.list html
predict.Coxmos html
print.Coxmos html
save_ggplot html
save_ggplot_lst html
sb.splsdacox html
sb.splsdrcox html
sb.splsdrcox_penalty html
sb.splsicox html
splsdacox html
splsdrcox html
splsdrcox_penalty html
splsicox html
w.starplot.Coxmos html
wIQR html
wbw html
wquantile html
wvar html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Coxmos)