* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Coxmos’ ...
** this is package ‘Coxmos’ version ‘1.1.3’
** package ‘Coxmos’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src'
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c Coxmos_init.c -o Coxmos_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c condSURV_init.c -o condSURV_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c survivalBIV.c -o survivalBIV.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Coxmos.so Coxmos_init.o condSURV_init.o survivalBIV.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXWe7bJ/R.INSTALL3b602a2c1eabcb/Coxmos/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Coxmos/00new/Coxmos/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Coxmos’
    finding HTML links ... done
    Beran                                   html  
    CV                                      html  
    Csurv                                   html  
    NR                                      html  
    PI                                      html  
    RocFun                                  html  
    X_multiomic                             html  
    X_proteomic                             html  
    Y_multiomic                             html  
    Y_proteomic                             html  
    cenROC                                  html  
    cox                                     html  
    cox.prediction                          html  
    coxEN                                   html  
    coxSW                                   html  
    coxmos                                  html  
    cv.coxEN                                html  
    cv.coxmos                               html  
    cv.isb.splsdacox                        html  
    cv.isb.splsdrcox                        html  
    cv.isb.splsdrcox_penalty                html  
    cv.isb.splsicox                         html  
    cv.mb.coxmos                            html  
    cv.mb.splsdacox                         html  
    cv.mb.splsdrcox                         html  
    cv.sb.splsdacox                         html  
    cv.sb.splsdrcox                         html  
    cv.sb.splsdrcox_penalty                 html  
    cv.sb.splsicox                          html  
    cv.splsdacox                            html  
    cv.splsdrcox                            html  
    cv.splsdrcox_penalty                    html  
    cv.splsicox                             html  
    deleteNearZeroCoefficientOfVariation    html  
    deleteNearZeroCoefficientOfVariation.mb
                                            html  
    deleteZeroOrNearZeroVariance            html  
    deleteZeroOrNearZeroVariance.mb         html  
    dnorkernel                              html  
    eval_Coxmos_model_per_variable          html  
    eval_Coxmos_model_per_variable.list     html  
    eval_Coxmos_models                      html  
    factorToBinary                          html  
    getAutoKM                               html  
    getAutoKM.list                          html  
    getCutoffAutoKM                         html  
    getCutoffAutoKM.list                    html  
    getDesign.MB                            html  
    getEPV                                  html  
    getEPV.mb                               html  
    getTestKM                               html  
    getTestKM.list                          html  
    getTrainTest                            html  
    integ                                   html  
    isb.splsdacox                           html  
    isb.splsdrcox                           html  
    isb.splsdrcox_penalty                   html  
    isb.splsicox                            html  
    ker_dis_i                               html  
    kfunc                                   html  
    kfunction                               html  
    loadingplot.Coxmos                      html  
    loadingplot.fromVector.Coxmos           html  
    mb.coxmos                               html  
    mb.splsdacox                            html  
    mb.splsdrcox                            html  
    muro                                    html  
    norm01                                  html  
    plot_Coxmos.MB.PLS.model                html  
    plot_Coxmos.PLS.model                   html  
    plot_cox.event                          html  
    plot_cox.event.list                     html  
    plot_divergent.biplot                   html  
    plot_evaluation                         html  
    plot_evaluation.list                    html  
    plot_events                             html  
    plot_forest                             html  
    plot_forest.list                        html  
    plot_multipleObservations.LP            html  
    plot_multipleObservations.LP.list       html  
    plot_observation.eventDensity           html  
    plot_observation.eventHistogram         html  
    plot_observation.pseudobeta             html  
    plot_observation.pseudobeta.list        html  
    plot_proportionalHazard                 html  
    plot_proportionalHazard.list            html  
    plot_pseudobeta                         html  
    plot_pseudobeta.list                    html  
    plot_sPLS_Coxmos                        html  
    plot_time.list                          html  
    predict.Coxmos                          html  
    print.Coxmos                            html  
    save_ggplot                             html  
    save_ggplot_lst                         html  
    sb.splsdacox                            html  
    sb.splsdrcox                            html  
    sb.splsdrcox_penalty                    html  
    sb.splsicox                             html  
    splsdacox                               html  
    splsdrcox                               html  
    splsdrcox_penalty                       html  
    splsicox                                html  
    w.starplot.Coxmos                       html  
    wIQR                                    html  
    wbw                                     html  
    wquantile                               html  
    wvar                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Coxmos)