* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Coxmos’ ...
** package ‘Coxmos’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/RtmpQt1ptp/R.INSTALL3bf5677a63da87/Coxmos/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Coxmos_init.c -o Coxmos_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c condSURV_init.c -o condSURV_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survivalBIV.c -o survivalBIV.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Coxmos.so Coxmos_init.o condSURV_init.o survivalBIV.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpQt1ptp/R.INSTALL3bf5677a63da87/Coxmos/src'
make[1]: Entering directory '/tmp/RtmpQt1ptp/R.INSTALL3bf5677a63da87/Coxmos/src'
make[1]: Leaving directory '/tmp/RtmpQt1ptp/R.INSTALL3bf5677a63da87/Coxmos/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Coxmos/00new/Coxmos/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Coxmos’
finding HTML links ... done
Beran html
CV html
Csurv html
NR html
PI html
RocFun html
X_multiomic html
X_proteomic html
Y_multiomic html
Y_proteomic html
cenROC html
cox html
cox.prediction html
coxEN html
coxSW html
cv.coxEN html
cv.isb.splsdrcox html
cv.isb.splsicox html
cv.mb.splsdacox html
cv.mb.splsdrcox html
cv.sb.splsdrcox html
cv.sb.splsicox html
cv.splsdacox_dynamic html
cv.splsdrcox html
cv.splsdrcox_dynamic html
cv.splsicox html
deleteNearZeroCoefficientOfVariation html
deleteNearZeroCoefficientOfVariation.mb
html
deleteZeroOrNearZeroVariance html
deleteZeroOrNearZeroVariance.mb html
dnorkernel html
eval_Coxmos_model_per_variable html
eval_Coxmos_models html
factorToBinary html
getAutoKM html
getAutoKM.list html
getCutoffAutoKM html
getCutoffAutoKM.list html
getEPV html
getEPV.mb html
getTestKM html
getTestKM.list html
integ html
ker_dis_i html
kfunc html
kfunction html
loadingplot.Coxmos html
loadingplot.fromVector.Coxmos html
mb.splsdacox html
mb.splsdrcox html
muro html
norm01 html
plot_Coxmos.MB.PLS.model html
plot_Coxmos.PLS.model html
plot_LP.multipleObservations html
plot_LP.multipleObservations.list html
plot_PLS_Coxmos html
plot_cox.event html
plot_cox.event.list html
plot_divergent.biplot html
plot_evaluation html
plot_evaluation.list html
plot_events html
plot_forest html
plot_forest.list html
plot_observation.eventDensity html
plot_observation.eventHistogram html
plot_proportionalHazard html
plot_proportionalHazard.list html
plot_pseudobeta html
plot_pseudobeta.list html
plot_pseudobeta_newObservation html
plot_pseudobeta_newObservation.list html
plot_time.list html
predict.Coxmos html
print.Coxmos html
save_ggplot html
save_ggplot.svg html
save_ggplot_lst html
save_ggplot_lst.svg html
sb.splsdrcox html
sb.splsicox html
splsdacox_dynamic html
splsdrcox html
splsdrcox_dynamic html
splsicox html
w.starplot.Coxmos html
wIQR html
wbw html
wquantile html
wvar html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘Coxmos’ as ‘Coxmos_1.0.2_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (Coxmos)