* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Corbi’ ...
** package ‘Corbi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpe2ZNab/R.INSTALLaaf5548fb8ae6/Corbi/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Corbi.cpp -o Corbi.o
In file included from Corbi.h:5,
from Corbi.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NetDEG.cpp -o NetDEG.o
In file included from Corbi.h:5,
from NetDEG.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c NetQuery.cpp -o NetQuery.o
In file included from Corbi.h:5,
from NetQuery.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ProAlign.cpp -o ProAlign.o
In file included from Corbi.h:5,
from ProAlign.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c Subnets.cpp -o Subnets.o
In file included from Corbi.h:5,
from Subnets.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c multihyper.cpp -o multihyper.o
In file included from Corbi.h:5,
from multihyper.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c quantile.cpp -o quantile.o
In file included from Corbi.h:5,
from quantile.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o
In file included from Corbi.h:5,
from utils.cpp:1:
misc.h: In function ‘SEXPREC* GetListElement(SEXP, const char*)’:
misc.h:82:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
82 | for (int i = 0; i < length(list); i++)
| ^~~
misc.h:88:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
88 | return value;
| ^~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Corbi.so Corbi.o NetDEG.o NetQuery.o ProAlign.o Subnets.o multihyper.o quantile.o utils.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpe2ZNab/R.INSTALLaaf5548fb8ae6/Corbi/src'
make[1]: Entering directory '/tmp/Rtmpe2ZNab/R.INSTALLaaf5548fb8ae6/Corbi/src'
make[1]: Leaving directory '/tmp/Rtmpe2ZNab/R.INSTALLaaf5548fb8ae6/Corbi/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Corbi/00new/Corbi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Corbi’
finding HTML links ... done
Corbi-package html
URG_getFactor html
URG_normalize html
best_subnets html
column html
extend_subnets html
get_adjusted_deg_diff html
get_diff_ratio_net html
get_ratio_distribution html
get_ratio_distribution2 html
get_ratio_variance html
get_shortest_distances html
get_subnets html
kappa_score html
make_DEG_data html
make_DEG_data2 html
make_DEG_pattern html
markrank html
netDEG html
netDEG_pvalue html
net_align html
net_query html
nnzero html
p_combine html
pmultihyper html
pmultinom html
read_net html
rmultihyper html
simulate_dropout html
simulate_dropout2 html
simulate_sample_groups html
submatrix html
write_net html
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Corbi)