* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CohortMethod’ ...
** this is package ‘CohortMethod’ version ‘6.0.2’
** package ‘CohortMethod’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-15 (Debian 15.2.0-17) 15.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl8T8Yu/R.INSTALL29f1064ea224bf/CohortMethod/src'
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c AdjustedKm.cpp -o AdjustedKm.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Auc.cpp -o Auc.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Match.cpp -o Match.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-15 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppWrapper.cpp -o RcppWrapper.o
g++-15 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CohortMethod.so AdjustedKm.o Auc.o Match.o RcppExports.o RcppWrapper.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl8T8Yu/R.INSTALL29f1064ea224bf/CohortMethod/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl8T8Yu/R.INSTALL29f1064ea224bf/CohortMethod/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl8T8Yu/R.INSTALL29f1064ea224bf/CohortMethod/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CohortMethod/00new/CohortMethod/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CohortMethod’
    finding HTML links ... done
    CohortMethod-package                    html  
    CohortMethodData-class                  html  
    adjustedKm                              html  
    checkCmInstallation                     html  
    cohortMethodDataSimulationProfile       html  
    computeCovariateBalance                 html  
    computeEquipoise                        html  
    computeMdrr                             html  
    computePsAuc                            html  
    convertUntypedListToCmAnalysesSpecifications
                                            html  
    createCmAnalysesSpecifications          html  
    createCmAnalysis                        html  
    createCmDiagnosticThresholds            html  
    createCmTable1                          html  
    createCohortMethodDataSimulationProfile
                                            html  
    createComputeCovariateBalanceArgs       html  
    createCreatePsArgs                      html  
    createCreateStudyPopulationArgs         html  
    createDefaultMultiThreadingSettings     html  
    createFitOutcomeModelArgs               html  
    createGetDbCohortMethodDataArgs         html  
    createMatchOnPsArgs                     html  
    createMultiThreadingSettings            html  
    createOutcome                           html  
    createPs                                html  
    createResultsDataModel                  html  
    createStratifyByPsArgs                  html  
    createStudyPopulation                   html  
    createTargetComparatorOutcomes          html  
    createTrimByPsArgs                      html  
    createTruncateIptwArgs                  html  
    drawAttritionDiagram                    html  
    exportToCsv                             html  
    fitOutcomeModel                         html  
    getAttritionTable                       html  
    getDataMigrator                         html  
    getDbCohortMethodData                   html  
    getDefaultCmTable1Specifications        html  
    getDiagnosticsSummary                   html  
    getFileReference                        html  
    getFollowUpDistribution                 html  
    getGeneralizabilityTable                html  
    getInteractionResultsSummary            html  
    getOutcomeModel                         html  
    getPsModel                              html  
    getResultsDataModelSpecifications       html  
    getResultsSummary                       html  
    isCohortMethodData                      html  
    loadCmAnalysisList                      html  
    loadCohortMethodData                    html  
    loadTargetComparatorOutcomesList        html  
    matchOnPs                               html  
    migrateDataModel                        html  
    plotCovariateBalanceOfTopVariables      html  
    plotCovariateBalanceScatterPlot         html  
    plotCovariatePrevalence                 html  
    plotFollowUpDistribution                html  
    plotKaplanMeier                         html  
    plotPs                                  html  
    plotTimeToEvent                         html  
    runCmAnalyses                           html  
    saveCmAnalysisList                      html  
    saveCohortMethodData                    html  
    saveTargetComparatorOutcomesList        html  
    simulateCohortMethodData                html  
    stratifyByPs                            html  
    trimByPs                                html  
    truncateIptw                            html  
    uploadResults                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CohortMethod)