* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CohortContrast’ ...
** this is package ‘CohortContrast’ version ‘1.0.0’
** package ‘CohortContrast’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CohortContrast’
    finding HTML links ... done
    CohortContrast                          html  
    CohortContrastViewer                    html  
    automaticCorrelationCombineConcepts     html  
    automaticHierarchyCombineConcepts       html  
    buildStudyMetadata                      html  
    calculateDataFeatures                   html  
    checkDataMode                           html  
    checkPythonDeps                         html  
    cohortFromCSV                           html  
    cohortFromCohortTable                   html  
    cohortFromDataTable                     html  
    cohortFromJSON                          html  
    configurePython                         html  
    convertToAbsolutePath                   html  
    createCohortContrastCdm                 html  
    createControlCohortInverse              html  
    createControlCohortMatching             html  
    createDataFeatures                      html  
    createPathToResults                     html  
    filterTemporalBiasConcepts              html  
    generateMappingTable                    html  
    generateSourceTables                    html  
    generateTables                          html  
    getPythonInfo                           html  
    getTopSeparatingConcepts                html  
    handleFeatureSelection                  html  
    handleMapping                           html  
    handleTests                             html  
    installPythonDeps                       html  
    installPythonDepsOffline                html  
    loadCohortContrastStudy                 html  
    matchCohortsByAge                       html  
    nGramClusterSummarization               html  
    nGramDiscovery                          html  
    performPrevalenceAnalysis               html  
    performPrevalenceAnalysisLogistic       html  
    precomputeSummary                       html  
    printCustomMessage                      html  
    queryMatchedControlPrevalences          html  
    removeTemporalBias                      html  
    resolveCohortTableOverlaps              html  
    resolveConceptNameOverlap               html  
    runCohortContrastViewer                 html  
    sanitize                                html  
    sanitizeSingle                          html  
    saveObjectMetadata                      html  
    saveObjectMetadataJson                  html  
    saveResult                              html  
    stopCohortContrastViewer                html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CohortContrast)