* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CoOL’ ...
** this is package ‘CoOL’ version ‘1.1.2’
** package ‘CoOL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
using C++11
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpL0odER/R.INSTALL18c5ca70776dad/CoOL/src'
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from RcppExports.cpp:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-14 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native   -c train_relu.cpp -o train_relu.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
                 from train_relu.cpp:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/version/arma.h:66:199: note: ‘#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.’
   66 |         #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT and also removing C++11 compilation directive. See GitHub issue #475 for more.")
      |                                                                                                                                                                                                       ^
g++-14 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CoOL.so RcppExports.o train_relu.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpL0odER/R.INSTALL18c5ca70776dad/CoOL/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpL0odER/R.INSTALL18c5ca70776dad/CoOL/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpL0odER/R.INSTALL18c5ca70776dad/CoOL/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CoOL/00new/CoOL/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CoOL’
    finding HTML links ... done
    CoOL_0_binary_encode_exposure_data      html  
    CoOL_0_common_simulation                html  
    CoOL_0_complex_simulation               html  
    CoOL_0_confounding_simulation           html  
    CoOL_0_mediation_simulation             html  
    CoOL_0_working_example                  html  
    CoOL_1_initiate_neural_network          html  
    CoOL_2_train_neural_network             html  
    CoOL_3_plot_neural_network              html  
    CoOL_4_AUC                              html  
    CoOL_4_predict_risks                    html  
    CoOL_5_layerwise_relevance_propagation
                                            html  
    CoOL_6_calibration_plot                 html  
    CoOL_6_dendrogram                       html  
    CoOL_6_individual_effects_matrix        html  
    CoOL_6_number_of_sub_groups             html  
    CoOL_6_sub_groups                       html  
    CoOL_6_sum_of_individual_effects        html  
    CoOL_7_prevalence_and_mean_risk_plot    html  
    CoOL_8_mean_risk_contributions_by_sub_group
                                            html  
    CoOL_9_visualised_mean_risk_contributions
                                            html  
    CoOL_9_visualised_mean_risk_contributions_legend
                                            html  
    CoOL_default                            html  
    cpp_train_network_relu                  html  
    random                                  html  
    rcpprelu                                html  
    rcpprelu_neg                            html  
    relu                                    html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CoOL)