* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CaseCohortCoxSurvival’ ...
** package ‘CaseCohortCoxSurvival’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-24) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpc1hWnj/R.INSTALL28b8c57d1245e5/CaseCohortCoxSurvival/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c CaseCohortCoxSurvival_init.c -o CaseCohortCoxSurvival_init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c source.c -o source.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CaseCohortCoxSurvival.so CaseCohortCoxSurvival_init.o source.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpc1hWnj/R.INSTALL28b8c57d1245e5/CaseCohortCoxSurvival/src'
make[1]: Entering directory '/tmp/Rtmpc1hWnj/R.INSTALL28b8c57d1245e5/CaseCohortCoxSurvival/src'
make[1]: Leaving directory '/tmp/Rtmpc1hWnj/R.INSTALL28b8c57d1245e5/CaseCohortCoxSurvival/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CaseCohortCoxSurvival/00new/CaseCohortCoxSurvival/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CaseCohortCoxSurvival’
    finding HTML links ... done
    CaseCohortCoxSurvival-package           html  
    auxiliary.construction                  html  
    calibration                             html  
    caseCohortCoxSurvival                   html  
    dataexample                             html  
    dataexample.missingdata                 html  
    estimatePureRisk                        html  
    estimation.CumBH                        html  
    estimation.PR                           html  
    estimation                              html  
    estimation.weights.phase3               html  
    influences.CumBH                        html  
    influences.CumBH.missingdata            html  
    influences.PR                           html  
    influences.PR.missingdata               html  
    influences.RH                           html  
    influences.RH.missingdata               html  
    influences                              html  
    influences.missingdata                  html  
    product.covar.weight                    html  
    robustvariance                          html  
    variance                                html  
    variance.missingdata                    html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* creating tarball
packaged installation of ‘CaseCohortCoxSurvival’ as ‘CaseCohortCoxSurvival_0.0.34_R_x86_64-pc-linux-gnu.tar.gz’
* DONE (CaseCohortCoxSurvival)