* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Canopy’ ...
** this is package ‘Canopy’ version ‘1.3.0’
** package ‘Canopy’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘Canopy’
    finding HTML links ... done
    AML43                                   html  
    MDA231                                  html  
    MDA231_sampchain                        html  
    MDA231_tree                             html  
    addsamptree                             html  
    canopy.BIC                              html  
    canopy.cluster.Estep                    html  
    canopy.cluster.Mstep                    html  
    canopy.cluster                          html  
    canopy.output                           html  
    canopy.plottree                         html  
    canopy.post                             html  
    canopy.sample                           html  
    canopy.sample.cluster                   html  
    canopy.sample.cluster.nocna             html  
    canopy.sample.nocna                     html  
    getCMCm                                 html  
    getCZ                                   html  
    getQ                                    html  
    getVAF                                  html  
    getZ                                    html  
    getclonalcomposition                    html  
    getlikelihood                           html  
    getlikelihood.sna                       html  
    initialP                                html  
    initialcna                              html  
    initialcnacopy                          html  
    initialsna                              html  
    sampP                                   html  
    sampcna                                 html  
    sampcnacopy                             html  
    sampsna                                 html  
    sampsna.cluster                         html  
    sortcna                                 html  
    toy                                     html  
    toy2                                    html  
    toy3                                    html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Canopy)