* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CLONETv2’ ...
** package ‘CLONETv2’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CLONETv2’
    finding HTML links ... done
    CLONETv2-package                        html  
    adm_table_toy                           html  
    allele_specific_cna_table_toy           html  
    bt_toy                                  html  
    check_ploidy_and_admixture              html  
    compute_allele_specific_scna_table      html  
    compute_beta_table                      html  
    compute_dna_admixture                   html  
    compute_ploidy                          html  
    compute_scna_clonality_table            html  
    compute_snv_clonality                   html  
    error_table                             html  
    pileup_normal_toy                       html  
    pileup_tumor_toy                        html  
    pl_table_toy                            html  
    scna_clonality_table_toy                html  
    seg_tb_toy                              html  
    snv_clonality_table_toy                 html  
    snv_reads_toy                           html  
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path