* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CIMEHR’ ...
** this is package ‘CIMEHR’ version ‘0.1.0’
** package ‘CIMEHR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-16 (Debian 16.2.0-1) 16.2.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAQPCtI/R.INSTALL7077a52d688f5/CIMEHR/src'
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-16 -std=gnu++20 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c pairwise_glm_fit.cpp -o pairwise_glm_fit.o
g++-16 -std=gnu++20 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CIMEHR.so RcppExports.o pairwise_glm_fit.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAQPCtI/R.INSTALL7077a52d688f5/CIMEHR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpAQPCtI/R.INSTALL7077a52d688f5/CIMEHR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpAQPCtI/R.INSTALL7077a52d688f5/CIMEHR/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CIMEHR/00new/CIMEHR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CIMEHR’
    finding HTML links ... done
    CIMEHR                                  html  
    CIMEHR_timevarying_integral             html  
    CIMEHR_timevarying_ou                   html  
    EHRJoint                                html  
    Inverse_intensity_rate_ratio_balancing
                                            html  
    Inverse_intensity_rate_ratio_weighting
                                            html  
    Joint_modeling_visiting_and_longitudinal_Liang
                                            html  
    Linear_increment_IP                     html  
    Linear_mixed_model                      html  
    Multiple_imputation_IP                  html  
    Pairwise_likelihood                     html  
    Summary_stat                            html  
    available_comparison_methods            html  
    bootstrap                               html  
    coef.CIMEHR                             html  
    confint.CIMEHR                          html  
    extract_coefficient                     html  
    method_comparisons                      html  
    print.CIMEHR                            html  
    print.CIMEHR_timevarying_integral       html  
    print.CIMEHR_timevarying_ou             html  
    print.EHRJoint                          html  
    print.Inverse_intensity_rate_ratio_balancing
                                            html  
    print.Inverse_intensity_rate_ratio_weighting
                                            html  
    print.Joint_modeling_visiting_and_longitudinal_Liang
                                            html  
    print.Linear_increment_IP_result        html  
    print.Linear_mixed_model_result         html  
    print.Multiple_imputation_IP_result     html  
    print.Pairwise_likelihood               html  
    print.Summary_stat_result               html  
    print.cimehr_bootstrap                  html  
    sim_data_gen                            html  
    sim_ehr_data                            html  
    summary.CIMEHR                          html  
    summary.CIMEHR_timevarying_integral     html  
    summary.CIMEHR_timevarying_ou           html  
    summary.EHRJoint                        html  
    summary.Inverse_intensity_rate_ratio_balancing
                                            html  
    summary.Inverse_intensity_rate_ratio_weighting
                                            html  
    summary.Joint_modeling_visiting_and_longitudinal_Liang
                                            html  
    summary.Linear_increment_IP_result      html  
    summary.Linear_mixed_model_result       html  
    summary.Multiple_imputation_IP_result   html  
    summary.Pairwise_likelihood             html  
    summary.Summary_stat_result             html  
    summary.cimehr_bootstrap                html  
    summary_observation                     html  
    summary_outcome                         html  
    summary_visiting                        html  
    vcov.CIMEHR                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CIMEHR)