* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CB2’ ...
** this is package ‘CB2’ version ‘1.3.6’
** package ‘CB2’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-10) 14.3.0’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDTSbug/R.INSTALL4fc8b45850fd0/CB2/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c CB2.cpp -o CB2.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CB2.so CB2.o RcppExports.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDTSbug/R.INSTALL4fc8b45850fd0/CB2/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpDTSbug/R.INSTALL4fc8b45850fd0/CB2/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpDTSbug/R.INSTALL4fc8b45850fd0/CB2/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CB2/00new/CB2/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CB2’
    finding HTML links ... done
    Evers_CRISPRn_RT112                     html  
    Sanson_CRISPRn_A375                     html  
    calc_mappability                        html  
    fit_ab                                  html  
    get_CPM                                 html  
    join_count_and_design                   html  
    measure_gene_stats                      html  
    measure_sgrna_stats                     html  
    plot_PCA                                html  
    plot_corr_heatmap                       html  
    plot_count_distribution                 html  
    plot_dotplot                            html  
    quant                                   html  
    rep_row                                 html  
    run_estimation                          html  
    run_sgrna_quant                         html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CB2)