* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘CAMAN’ ...
** package ‘CAMAN’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmp2QGurH/R.INSTALL2884851e75e4d2/CAMAN/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c methods.cpp -o methods.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c vemema_vem.cpp -o vemema_vem.o
vemema_vem.cpp: In member function ‘std::vector<std::vector<double> > VEMEMA::vem_bivariate(int, double)’:
vemema_vem.cpp:1864:9: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1864 |         for(i=0;i<(int)p.size(); ++i)
      |         ^~~
vemema_vem.cpp:1874:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1874 |                 lambda.clear();
      |                 ^~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o CAMAN.so methods.o vemema_vem.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp2QGurH/R.INSTALL2884851e75e4d2/CAMAN/src'
make[1]: Entering directory '/tmp/Rtmp2QGurH/R.INSTALL2884851e75e4d2/CAMAN/src'
make[1]: Leaving directory '/tmp/Rtmp2QGurH/R.INSTALL2884851e75e4d2/CAMAN/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-CAMAN/00new/CAMAN/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘CAMAN’
    finding HTML links ... done
    CT                                      html  
    NoP                                     html  
    PCT                                     html  
    anova.CAMAN.object                      html  
    aspirin                                 html  
    betaplasma                              html  
    bivariate.EM                            html  
    bivariate.VEM                           html  
    bivariate.mixalg                        html  
    boot                                    html  
    getFDR                                  html  
    golubMerge                              html  
    heage                                   html  
    hepab                                   html  
    hist.CAMAN.object                       html  
    leukDat                                 html  
    mixalg.EM                               html  
    mixalg                                  html  
    mixalg.VEM                              html  
    mixalg.boot                             html  
    mixcov                                  html  
    plots                                   html  
    rs12363681                              html  
    thai_cohort                             html  
    vem_grad                                html  
    vitamin                                 html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CAMAN)