* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BoutrosLab.plotting.general’ ...
** package ‘BoutrosLab.plotting.general’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (Debian 13.2.0-23) 13.2.0’
make[1]: Entering directory '/tmp/RtmpKUfF6Y/R.INSTALL8019c15ca570/BoutrosLab.plotting.general/src'
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c distance.c -o distance.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c init.c -o init.o
gcc-13 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG   -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ks.c -o ks.o
gcc-13 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BoutrosLab.plotting.general.so distance.o init.o ks.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpKUfF6Y/R.INSTALL8019c15ca570/BoutrosLab.plotting.general/src'
make[1]: Entering directory '/tmp/RtmpKUfF6Y/R.INSTALL8019c15ca570/BoutrosLab.plotting.general/src'
make[1]: Leaving directory '/tmp/RtmpKUfF6Y/R.INSTALL8019c15ca570/BoutrosLab.plotting.general/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BoutrosLab.plotting.general/00new/BoutrosLab.plotting.general/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BoutrosLab.plotting.general’
    finding HTML links ... done
    CNA                                     html  
    SNV                                     html  
    auto.axis                               html  
    colour.gradient                         html  
    covariates.grob                         html  
    create.barplot                          html  
    create.boxplot                          html  
    create.colourkey                        html  
    create.dendrogram                       html  
    create.densityplot                      html  
    create.dotmap                           html  
    create.gif                              html  
    create.heatmap                          html  
    create.hexbinplot                       html  
    create.histogram                        html  
    create.lollipopplot                     html  
    create.manhattanplot                    html  
    create.multipanelplot                   html  
    create.multiplot                        html  
    create.polygonplot                      html  
    create.qqplot.comparison                html  
    create.qqplot.fit                       html  
    create.qqplot.fit.confidence.interval   html  
    create.scatterplot                      html  
    create.segplot                          html  
    create.stripplot                        html  
    create.violinplot                       html  
    critical.value.ks.test                  html  
    default.colours                         html  
    display.colours                         html  
    display.statistical.result              html  
    dist                                    html  
    force.colour.scheme                     html  
    generate.at.final                       html  
    get.corr.key                            html  
    get.correlation.p.and.corr              html  
    get.defaults                            html  
    get.line.breaks                         html  
    legend.grob                             html  
    microarray                              html  
    panel.BL.bwplot                         html  
    patient                                 html  
    pcawg.colours                           html  
    scientific.notation                     html  
    show.available.palettes                 html  
    thousands.split                         html  
    write.metadata                          html  
    write.plot                              html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoutrosLab.plotting.general)