* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BoomSpikeSlab’ ...
** this is package ‘BoomSpikeSlab’ version ‘1.2.7’
** package ‘BoomSpikeSlab’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.3.0-8) 14.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl7rPgJ/R.INSTALL2f1dd92820ad25/BoomSpikeSlab/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c boom_spike_slab_init.cc -o boom_spike_slab_init.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c logit_spike_slab_wrapper.cc -o logit_spike_slab_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22,
                 from logit_spike_slab_wrapper.cc:17:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  215 |       for (int i = 0; i < threads_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |       for (int i = 0; i < workers_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
In file included from logit_spike_slab_wrapper.cc:14:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::BinomialLogitCompositeSpikeSlabSampler]’:
logit_spike_slab_wrapper.cc:95:46:   required from here
   95 |       BOOM::spikeslab::InitializeCoefficients(
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
   96 |           BOOM::ToBoomVector(r_beta0),
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~        
   97 |           prior.prior_inclusion_probabilities(),
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   98 |           model,
      |           ~~~~~~                              
   99 |           sampler);
      |           ~~~~~~~~                            
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c mlm_spike_slab_wrapper.cc -o mlm_spike_slab_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/MLVS_data_imputer.hpp:26,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/MLVS.hpp:23,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/MultinomialLogitCompositeSpikeSlabSampler.hpp:24,
                 from mlm_spike_slab_wrapper.cc:2:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  215 |       for (int i = 0; i < threads_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |       for (int i = 0; i < workers_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nested_regression_wrapper.cc -o nested_regression_wrapper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c nnet_wrapper.cc -o nnet_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Nnet/GaussianFeedForwardNeuralNetwork.hpp:21,
                 from nnet_wrapper.cc:3:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Nnet/Nnet.hpp: In function ‘void BOOM::Nnet::to_binary(const BOOM::Vector&, std::vector<bool>&)’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Nnet/Nnet.hpp:40:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   40 |       for (int i = 0; i < numeric.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitAuxmixSampler.hpp:23,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitSpikeSlabSampler.hpp:23,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/BinomialLogitCompositeSpikeSlabSampler.hpp:22,
                 from nnet_wrapper.cc:11:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  215 |       for (int i = 0; i < threads_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |       for (int i = 0; i < workers_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c poisson_spike_slab_wrapper.cc -o poisson_spike_slab_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionAuxMixSampler.hpp:30,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/PoissonRegressionSpikeSlabSampler.hpp:24,
                 from poisson_spike_slab_wrapper.cc:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  215 |       for (int i = 0; i < threads_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |       for (int i = 0; i < workers_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
In file included from poisson_spike_slab_wrapper.cc:16:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::PoissonRegressionSpikeSlabSampler]’:
poisson_spike_slab_wrapper.cc:55:44:   required from here
   55 |     BOOM::spikeslab::InitializeCoefficients(
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
   56 |         ToBoomVector(r_initial_beta),
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       
   57 |         prior_spec.spike()->prior_inclusion_probabilities(),
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   58 |         model,
      |         ~~~~~~                              
   59 |         sampler);
      |         ~~~~~~~~                            
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c probit_spike_slab_wrapper.cc -o probit_spike_slab_wrapper.o
In file included from probit_spike_slab_wrapper.cc:14:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::BinomialProbitCompositeSpikeSlabSampler]’:
probit_spike_slab_wrapper.cc:80:46:   required from here
   80 |       BOOM::spikeslab::InitializeCoefficients(
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
   81 |           BOOM::ToBoomVector(r_beta0),
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~        
   82 |           prior.prior_inclusion_probabilities(),
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   83 |           model,
      |           ~~~~~~                              
   84 |           sampler);
      |           ~~~~~~~~                            
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c quantile_spike_wrapper.cc -o quantile_spike_wrapper.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:31,
                 from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/Glm/PosteriorSamplers/QuantileRegressionPosteriorSampler.hpp:28,
                 from quantile_spike_wrapper.cc:4:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp: In member function ‘int BOOM::ThreadWorkerPool::number_of_joinable_threads() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/cpputil/ThreadTools.hpp:215:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::thread>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  215 |       for (int i = 0; i < threads_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp: In member function ‘int BOOM::ParallelLatentDataImputer::number_of_observations_managed() const’:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include/Models/PosteriorSamplers/Imputer.hpp:218:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<BOOM::Ptr<BOOM::LatentDataImputerWorker> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  218 |       for (int i = 0; i < workers_.size(); ++i) {
      |                       ~~^~~~~~~~~~~~~~~~~
In file included from quantile_spike_wrapper.cc:13:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::QuantileRegressionSpikeSlabSampler]’:
quantile_spike_wrapper.cc:50:44:   required from here
   50 |     BOOM::spikeslab::InitializeCoefficients(
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
   51 |         ToBoomVector(r_initial_beta),
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~       
   52 |         prior_spec.spike()->prior_inclusion_probabilities(),
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   53 |         model,
      |         ~~~~~~                              
   54 |         sampler);
      |         ~~~~~~~~                            
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c shrinkage_regression_wrapper.cc -o shrinkage_regression_wrapper.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c spike_slab_wrapper.cc -o spike_slab_wrapper.o
In file included from spike_slab_wrapper.cc:23:
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::BregVsSampler]’:
spike_slab_wrapper.cc:113:48:   required from here
  113 |         BOOM::spikeslab::InitializeCoefficients(
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
  114 |             model->Beta(),
      |             ~~~~~~~~~~~~~~                      
  115 |             prior.spike()->prior_inclusion_probabilities(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  116 |             model,
      |             ~~~~~~                              
  117 |             ssvs_sampler);
      |             ~~~~~~~~~~~~~                       
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::AdaptiveSpikeSlabRegressionSampler]’:
spike_slab_wrapper.cc:135:48:   required from here
  135 |         BOOM::spikeslab::InitializeCoefficients(
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
  136 |             model->Beta(),
      |             ~~~~~~~~~~~~~~                      
  137 |             prior.spike()->prior_inclusion_probabilities(),
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  138 |             model,
      |             ~~~~~~                              
  139 |             ssvs_sampler);
      |             ~~~~~~~~~~~~~                       
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
utils.h: In instantiation of ‘void BOOM::spikeslab::InitializeCoefficients(const BOOM::Vector&, const BOOM::Vector&, BOOM::Ptr<BOOM::GlmModel>, BOOM::Ptr<Y>) [with SAMPLER = BOOM::SpikeSlabDaRegressionSampler]’:
spike_slab_wrapper.cc:157:46:   required from here
  157 |       BOOM::spikeslab::InitializeCoefficients(
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^
  158 |           model->Beta(),
      |           ~~~~~~~~~~~~~~                      
  159 |           prior.spike()->prior_inclusion_probabilities(),
      |           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  160 |           model,
      |           ~~~~~~                              
  161 |           oda_sampler);
      |           ~~~~~~~~~~~~                        
utils.h:35:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   35 |     for (int i = 0; i < initial_beta.size(); ++i) {
      |                     ~~^~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I`/home/hornik/tmp/R.check/r-patched-gcc/Work/build/bin/Rscript -e "cat(system.file(package='Boom'))"`/include -DADD_ -DR_NO_REMAP -DRLANGUAGE -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c splines.cc -o splines.o
splines.cc: In function ‘SEXPREC* boom_spike_slab_Bspline_basis(SEXP, SEXP)’:
splines.cc:38:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   38 |       for (int i = 0; i < x.size(); ++i) {
      |                       ~~^~~~~~~~~~
splines.cc: In function ‘SEXPREC* boom_spike_slab_Mspline_basis(SEXP, SEXP)’:
splines.cc:58:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   58 |       for (int i = 0; i < x.size(); ++i) {
      |                       ~~^~~~~~~~~~
splines.cc: In function ‘SEXPREC* boom_spike_slab_Ispline_basis(SEXP, SEXP)’:
splines.cc:77:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   77 |       for (int i = 0; i < x.size(); ++i) {
      |                       ~~^~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BoomSpikeSlab.so boom_spike_slab_init.o logit_spike_slab_wrapper.o mlm_spike_slab_wrapper.o nested_regression_wrapper.o nnet_wrapper.o poisson_spike_slab_wrapper.o probit_spike_slab_wrapper.o quantile_spike_wrapper.o shrinkage_regression_wrapper.o spike_slab_wrapper.o splines.o /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Boom/lib/libboom.a -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl7rPgJ/R.INSTALL2f1dd92820ad25/BoomSpikeSlab/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpl7rPgJ/R.INSTALL2f1dd92820ad25/BoomSpikeSlab/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpl7rPgJ/R.INSTALL2f1dd92820ad25/BoomSpikeSlab/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BoomSpikeSlab/00new/BoomSpikeSlab/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BoomSpikeSlab’
    finding HTML links ... done
    independent.spike.slab.prior            html  
    independent.student.spike.slab.prior    html  
    lm.spike                                html  
    logit.spike                             html  
    logit.zellner.prior                     html  
    mlm.spike                               html  
    mlm.spike.slab.prior                    html  
    model.matrix                            html  
    model.matrix.glm.spike                  html  
    nested.regression                       html  
    nnet                                    html  
    partial.dependence.plot                 html  
    plot.BayesNnet                          html  
    plot.coefficients                       html  
    plot.lm.spike                           html  
    plot.lm.spike.fit                       html  
    plot.lm.spike.residuals                 html  
    plot.logit.spike                        html  
    plot.logit.spike.fit.summary            html  
    plot.logit.spike.residuals              html  
    plot.marginal.inclusion.probabilities   html  
    plot.model.size                         html  
    plot.poisson.spike                      html  
    plot.qreg.spike                         html  
    poisson.spike                           html  
    poisson.zellner.prior                   html  
    predict.lm.spike                        html  
    print.summary.lm.spike                  html  
    probit.spike                            html  
    qreg.spike                              html  
    residuals.lm.spike                      html  
    shrinkage.regression                    html  
    spike.slab.glm.prior                    html  
    spike.slab.prior                        html  
    spike.slab.prior.base                   html  
    splines                                 html  
    student.spike.slab.prior                html  
    suggest.burn                            html  
    summarize_spike_slab_coefficients       html  
    summary.lm.spike                        html  
    summary.logit.spike                     html  
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoomSpikeSlab)