* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BoltzMM’ ...
** package ‘BoltzMM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/RtmphBiUSa/R.INSTALL2863123379b160/BoltzMM/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BoltzMM.cpp -o BoltzMM.o
BoltzMM.cpp:10: warning: "NDEBUG" redefined
10 | #define NDEBUG
|
<command-line>: note: this is the location of the previous definition
BoltzMM.cpp: In function ‘double pfvbm(arma::vec, arma::vec, arma::mat)’:
BoltzMM.cpp:56:19: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
56 | if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~~
BoltzMM.cpp:56:38: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
56 | if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:56:56: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
56 | if(xval.n_elem!= n || Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp: In function ‘arma::rowvec allpfvbm(arma::vec, arma::mat)’:
BoltzMM.cpp:90:19: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
90 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:90:37: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
90 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp: In function ‘arma::mat rfvbm(int, arma::vec, arma::mat)’:
BoltzMM.cpp:125:17: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
125 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:125:35: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
125 | if(Mmat.n_rows!=n || Mmat.n_cols!=n || Mmat.n_rows!=Mmat.n_cols ){
| ~~~~~~~~~~~^~~
BoltzMM.cpp: In function ‘Rcpp::List fitfvbm(arma::mat, arma::vec, arma::mat, double, int)’:
BoltzMM.cpp:167:19: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
167 | if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:167:37: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
167 | if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
| ~~~~~~~~~~~^~~
BoltzMM.cpp:167:56: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘int’ [-Wsign-compare]
167 | if(Mmat.n_rows!=D || Mmat.n_cols!=D || data.n_cols !=D || data.n_cols!=Mmat.n_cols || data.n_cols!=Mmat.n_rows || Mmat.n_rows!=Mmat.n_cols){
| ~~~~~~~~~~~~^~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BoltzMM.so BoltzMM.o RcppExports.o -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmphBiUSa/R.INSTALL2863123379b160/BoltzMM/src'
make[1]: Entering directory '/tmp/RtmphBiUSa/R.INSTALL2863123379b160/BoltzMM/src'
make[1]: Leaving directory '/tmp/RtmphBiUSa/R.INSTALL2863123379b160/BoltzMM/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BoltzMM/00new/BoltzMM/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘BoltzMM’
finding HTML links ... done
BoltzMM html
allpfvbm html
fitfvbm html
fvbmHess html
fvbmcov html
fvbmpartiald html
fvbmstderr html
fvbmtests html
marginpfvbm html
pfvbm html
rfvbm html
senate html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BoltzMM)