* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BipartiteModularityMaximization’ ...
** package ‘BipartiteModularityMaximization’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/Rtmpj2tskT/R.INSTALL1f242332fcdbba/BipartiteModularityMaximization/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CoClust_allInOne.cpp -o CoClust_allInOne.o
CoClust_allInOne.cpp: In function ‘comstruct barber(double (*)(), int, double**, int, int)’:
CoClust_allInOne.cpp:48:15: warning: unused variable ‘l’ [-Wunused-variable]
48 | int i, j, l, ii, flag=0, n, ng,ngtemp,gstemp, nn, np;
| ^
CoClust_allInOne.cpp: In function ‘double BBbisection(double (*)(), double**, int*, int*, int)’:
CoClust_allInOne.cpp:226:20: warning: unused variable ‘nn’ [-Wunused-variable]
226 | int i,j,l, nn=0, np=0, na=0, nt=0, min, flag=0;
| ^~
CoClust_allInOne.cpp:226:26: warning: unused variable ‘np’ [-Wunused-variable]
226 | int i,j,l, nn=0, np=0, na=0, nt=0, min, flag=0;
| ^~
CoClust_allInOne.cpp:227:16: warning: unused variable ‘x0’ [-Wunused-variable]
227 | double x0,x,bik,dQ, xa, xt;
| ^~
CoClust_allInOne.cpp:227:19: warning: unused variable ‘x’ [-Wunused-variable]
227 | double x0,x,bik,dQ, xa, xt;
| ^
CoClust_allInOne.cpp:227:21: warning: unused variable ‘bik’ [-Wunused-variable]
227 | double x0,x,bik,dQ, xa, xt;
| ^~~
CoClust_allInOne.cpp: In function ‘double BBKLtuning(double (*)(), double**, int*, int, int)’:
CoClust_allInOne.cpp:417:19: warning: unused variable ‘k’ [-Wunused-variable]
417 | int i, j, k, p, r, n;
| ^
CoClust_allInOne.cpp: In function ‘void invertrans(int**, int, int*, int*, int**)’:
CoClust_allInOne.cpp:883:19: warning: variable ‘temp’ set but not used [-Wunused-but-set-variable]
883 | int i,j,k,temp,flag=0;
| ^~~~
CoClust_allInOne.cpp: In function ‘double BBKLtuning(double (*)(), double**, int*, int, int)’:
CoClust_allInOne.cpp:471:17: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
471 | if (p==1) {
| ^~
CoClust_allInOne.cpp:417:22: note: ‘p’ was declared here
417 | int i, j, k, p, r, n;
| ^
CoClust_allInOne.cpp: In function ‘double BBFinaltuning(double (*)(), double**, int**, int, int, int*)’:
CoClust_allInOne.cpp:637:50: warning: ‘p’ may be used uninitialized [-Wmaybe-uninitialized]
637 | p++;
| ~^~
CoClust_allInOne.cpp:559:20: note: ‘p’ was declared here
559 | int i,j,k, p, r, n;
| ^
CoClust_allInOne.cpp: In function ‘double BBAgglomeration(double**, int, int, int*, int*, int**)’:
CoClust_allInOne.cpp:826:25: warning: ‘R’ may be used uninitialized [-Wmaybe-uninitialized]
826 | con_to_G(config[R],n,ng,gs,G);
| ^
CoClust_allInOne.cpp:767:25: note: ‘R’ was declared here
767 | int i,j,k,ii,jj,R,commnum,g1,g2,n;
| ^
CoClust_allInOne.cpp:808:39: warning: ‘g1’ may be used uninitialized [-Wmaybe-uninitialized]
808 | con[j]=g1;
| ~~~~~~^~~
CoClust_allInOne.cpp:767:35: note: ‘g1’ was declared here
767 | int i,j,k,ii,jj,R,commnum,g1,g2,n;
| ^~
CoClust_allInOne.cpp:807:25: warning: ‘g2’ may be used uninitialized [-Wmaybe-uninitialized]
807 | if (con[j]==g2)
| ^~
CoClust_allInOne.cpp:767:38: note: ‘g2’ was declared here
767 | int i,j,k,ii,jj,R,commnum,g1,g2,n;
| ^~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BipartiteModularityMaximization.so CoClust_allInOne.o RcppExports.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpj2tskT/R.INSTALL1f242332fcdbba/BipartiteModularityMaximization/src'
make[1]: Entering directory '/tmp/Rtmpj2tskT/R.INSTALL1f242332fcdbba/BipartiteModularityMaximization/src'
make[1]: Leaving directory '/tmp/Rtmpj2tskT/R.INSTALL1f242332fcdbba/BipartiteModularityMaximization/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BipartiteModularityMaximization/00new/BipartiteModularityMaximization/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘BipartiteModularityMaximization’
finding HTML links ... done
CoClust html
bipmod html
example_data html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BipartiteModularityMaximization)