* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BinaryDosage’ ...
** package ‘BinaryDosage’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/Rtmpi2xjXA/R.INSTALL1de42838a8cc46/BinaryDosage/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c FileInfo.cpp -o FileInfo.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c ReadBinaryDosage.cpp -o ReadBinaryDosage.o
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native   -c WriteBinaryDosage.cpp -o WriteBinaryDosage.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BinaryDosage.so FileInfo.o RcppExports.o ReadBinaryDosage.o WriteBinaryDosage.o -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpi2xjXA/R.INSTALL1de42838a8cc46/BinaryDosage/src'
make[1]: Entering directory '/tmp/Rtmpi2xjXA/R.INSTALL1de42838a8cc46/BinaryDosage/src'
make[1]: Leaving directory '/tmp/Rtmpi2xjXA/R.INSTALL1de42838a8cc46/BinaryDosage/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BinaryDosage/00new/BinaryDosage/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package ‘BinaryDosage’
    finding HTML links ... done
    bdapply                                 html  
    bdmerge                                 html  
    genapply                                html  
    gentobd                                 html  
    getaaf                                  html  
    getbdinfo                               html  
    getgeninfo                              html  
    getmaf                                  html  
    getrsq                                  html  
    getsnp                                  html  
    getvcfinfo                              html  
    vcfapply                                html  
    vcftobd                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BinaryDosage)