* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘Bayesrel’ ...
** package ‘Bayesrel’ successfully unpacked and MD5 sums checked
** using staged installation
Using bundled CSDP
checking for gcc... gcc-13
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc-13 accepts -g... yes
checking for gcc-13 option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc-13 -E
checking whether we are using the GNU C++ compiler... yes
checking whether g++-13 -std=gnu++17 accepts -g... yes
checking how to run the C++ preprocessor... g++-13 -std=gnu++17 -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++-13 -std=gnu++17 accepts -g... (cached) yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
make[1]: Entering directory '/tmp/RtmpJRSBFu/R.INSTALL2827213df8a75c/Bayesrel/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c BayesrelCpp.cpp -o BayesrelCpp.o
BayesrelCpp.cpp: In function ‘arma::dvec csdpArma(int, int, int, const arma::ivec&, const arma::ivec&, const Rcpp::List&, const Rcpp::List&, const arma::dvec&, const arma::cube&, Rcpp::Function, int)’:
BayesrelCpp.cpp:31:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
31 | int status;
| ^~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c LowBoundsCpp.cpp -o LowBoundsCpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c convertCpp.cpp -o convertCpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c customsdpCpp.cpp -o customsdpCpp.o
customsdpCpp.cpp: In function ‘int custom_sdpCpp(int, int, blockmatrix&, double*, constraintmatrix*, double, double*, double*, const arma::cube&, arma::dvec&, Rcpp::Function, bool, int)’:
customsdpCpp.cpp:423:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
423 | for(i=0; i<car.n_rows; i++)
| ~^~~~~~~~~~~
customsdpCpp.cpp:525:14: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized]
525 | return(ret);
| ^
customsdpCpp.cpp:35:7: note: ‘ret’ was declared here
35 | int ret;
| ^~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c initArma.cpp -o initArma.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -ICsdp/include -DNOSHORTS -DARMA_NO_DEBUG=1 -DARMA_DONT_USE_FORTRAN_HIDDEN_ARGS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pfaCpp.cpp -o pfaCpp.o
(cd Csdp/lib && \
(make libsdp.a CC="gcc-13" CFLAGS="-DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include" AR="ar" RANLIB="ranlib") && \
touch Csdp.ts)
make[2]: Entering directory '/tmp/RtmpJRSBFu/R.INSTALL2827213df8a75c/Bayesrel/src/Csdp/lib'
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o readprob.o readprob.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sdp.o sdp.c
sdp.c: In function ‘sdp’:
sdp.c:724: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
724 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k,workvec8) private(i,j)
|
sdp.c:769: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
769 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(O,k,ldam)
|
sdp.c:118:7: warning: variable ‘lastimprove’ set but not used [-Wunused-but-set-variable]
118 | int lastimprove=0;
| ^~~~~~~~~~~
sdp.c:107:10: warning: variable ‘newdobj’ set but not used [-Wunused-but-set-variable]
107 | double newdobj;
| ^~~~~~~
sdp.c:106:10: warning: variable ‘newpobj’ set but not used [-Wunused-but-set-variable]
106 | double newpobj;
| ^~~~~~~
sdp.c:105:10: warning: variable ‘oldmaxrelinfeas’ set but not used [-Wunused-but-set-variable]
105 | double oldmaxrelinfeas=1.0e100;
| ^~~~~~~~~~~~~~~
sdp.c:88:10: warning: variable ‘oldmu’ set but not used [-Wunused-but-set-variable]
88 | double oldmu;
| ^~~~~
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o op_o.o op_o.c
op_o.c: In function ‘op_o’:
op_o.c:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i)
|
op_o.c:132: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
132 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(k,constraints,byblocks,Zi,X,O,work1, work2, work, ldam) private(j, ii, jj, blocksize, p, q, r, s, ptri, ptrj, blocknum, contrib, Ziblk, Xblk, workblk, work2blk, enti, entj, scale1, scale2, thread_num)
|
op_o.c:428: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
428 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(O,ldam,k) private(j,i)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o psd_feas.o psd_feas.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o op_a.o op_a.c
op_a.c: In function ‘op_a’:
op_a.c:22: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
22 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,contrib,ptr,blk,nume,vec,j,p,mat,ent,q) shared(k,constraints,result,X)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o op_at.o op_at.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o Fnorm.o Fnorm.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o calc_pobj.o calc_pobj.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o calc_dobj.o calc_dobj.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o trace_prod.o trace_prod.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o zero_mat.o zero_mat.c
zero_mat.c: In function ‘zero_mat’:
zero_mat.c:33: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
33 | #pragma omp parallel for schedule(dynamic,64) default(none) shared(A,blk) private(j,i)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o mat_mult.o mat_mult.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sym_mat.o sym_mat.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o copy_mat.o copy_mat.c
copy_mat.c: In function ‘copy_mat’:
copy_mat.c:28: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
28 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o addscaledmat.o addscaledmat.c
addscaledmat.c: In function ‘addscaledmat’:
addscaledmat.c:29: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
29 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(A,B,C,scale,blk)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o user_exit.o user_exit.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o make_i.o make_i.c
make_i.c: In function ‘make_i’:
make_i.c:25: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
25 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,p,A)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o allocmat.o allocmat.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o initsoln.o initsoln.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o initparams.o initparams.c
initparams.c: In function ‘initparams’:
initparams.c:34:11: warning: variable ‘ret’ set but not used [-Wunused-but-set-variable]
34 | int ret = fscanf(paramfile,"%*[^=]%*c%lf",&(params->axtol));
| ^~~
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o add_mat.o add_mat.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o writesol.o writesol.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o readsol.o readsol.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o easysdp.o easysdp.c
easysdp.c: In function ‘easy_sdp’:
easysdp.c:55:7: warning: variable ‘blk’ set but not used [-Wunused-but-set-variable]
55 | int blk;
| ^~~
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o writeprob.o writeprob.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o solvesys.o solvesys.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o makefill.o makefill.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o mat_multsp.o mat_multsp.c
mat_multsp.c: In function ‘mat_multspb’:
mat_multsp.c:169: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
169 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,j) shared(blk,C,scale2)
|
mat_multsp.c:55:7: warning: unused variable ‘thread_num’ [-Wunused-variable]
55 | int thread_num;
| ^~~~~~~~~~
mat_multsp.c:54:7: warning: unused variable ‘total_threads’ [-Wunused-variable]
54 | int total_threads;
| ^~~~~~~~~~~~~
mat_multsp.c: In function ‘mat_multspa’:
mat_multsp.c:406: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
406 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2)
|
mat_multsp.c:291:7: warning: unused variable ‘thread_num’ [-Wunused-variable]
291 | int thread_num;
| ^~~~~~~~~~
mat_multsp.c:290:7: warning: unused variable ‘total_threads’ [-Wunused-variable]
290 | int total_threads;
| ^~~~~~~~~~~~~
mat_multsp.c: In function ‘mat_multspc’:
mat_multsp.c:589: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
589 | #pragma omp parallel for schedule(dynamic,64) default(none) private(i,ii,p,q,temp) shared(ptr,A,B,C,blk,blksize,scale1)
|
mat_multsp.c:630: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
630 | #pragma omp parallel for default(none) schedule(dynamic,64) private(i,j) shared(blk,C,scale2)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o norms.o norms.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o linesearch.o linesearch.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o matvec.o matvec.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o chol.o chol.c
chol.c: In function ‘chol_inv’:
chol.c:158:10: warning: variable ‘scale’ set but not used [-Wunused-but-set-variable]
158 | double scale;
| ^~~~~
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o qreig.o qreig.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o tweakgap.o tweakgap.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o freeprob.o freeprob.c
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o packed.o packed.c
packed.c: In function ‘store_packed’:
packed.c:31: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
31 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n)
|
packed.c: In function ‘store_unpacked’:
packed.c:65: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
65 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(p,q,n)
|
packed.c: In function ‘triu’:
packed.c:193: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
193 | #pragma omp parallel for schedule(dynamic,64) private(i,j) shared(A,n)
|
gcc-13 -DDEFINE_FUNCTIONS_LAPACK_BLAS -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -DNOSHORTS -I../include -c -o sortentries.o sortentries.c
ar cr libsdp.a readprob.o sdp.o op_o.o psd_feas.o op_a.o op_at.o Fnorm.o calc_pobj.o calc_dobj.o trace_prod.o zero_mat.o mat_mult.o sym_mat.o copy_mat.o addscaledmat.o user_exit.o make_i.o allocmat.o initsoln.o initparams.o add_mat.o writesol.o readsol.o easysdp.o writeprob.o solvesys.o makefill.o mat_multsp.o norms.o linesearch.o matvec.o chol.o qreig.o tweakgap.o freeprob.o packed.o sortentries.o
make[2]: Leaving directory '/tmp/RtmpJRSBFu/R.INSTALL2827213df8a75c/Bayesrel/src/Csdp/lib'
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o Bayesrel.so BayesrelCpp.o LowBoundsCpp.o RcppExports.o convertCpp.o customsdpCpp.o initArma.o pfaCpp.o -LCsdp/lib -lsdp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -lm -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpJRSBFu/R.INSTALL2827213df8a75c/Bayesrel/src'
make[1]: Entering directory '/tmp/RtmpJRSBFu/R.INSTALL2827213df8a75c/Bayesrel/src'
make[1]: Leaving directory '/tmp/RtmpJRSBFu/R.INSTALL2827213df8a75c/Bayesrel/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-Bayesrel/00new/Bayesrel/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘Bayesrel’
finding HTML links ... done
Bayesrel-deprecated html
asrm html
asrm_mis html
bomegas html
cavalini html
multiFit html
omegaFit html
omega_fit-deprecated html
omegasCFA html
pOmegas html
pStrel html
p_omegas-deprecated html
p_strel-deprecated html
secoFit-deprecated html
seco_fit-deprecated html
strel html
upps html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Bayesrel)