* installing to library ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages’
* installing *source* package ‘BayesReversePLLH’ ...
** package ‘BayesReversePLLH’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’
using C++11
make[1]: Entering directory '/tmp/Rtmp2Ul6sc/R.INSTALL282be66f94399d/BayesReversePLLH/src'
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c BayesReversePLLH.cpp -o BayesReversePLLH.o
In file included from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo:26,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/RcppArmadillo.h:29,
from BayesReversePLLH.cpp:5:
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: ‘#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed’
321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: ‘#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead’
326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: ‘#pragma message: INFO: see the documentation for details’
329 | #pragma message ("INFO: see the documentation for details")
| ^
BayesReversePLLH.cpp: In function ‘arma::vec GetSlopePLLH(arma::vec, arma::vec, int)’:
BayesReversePLLH.cpp:94:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
94 | for(m=0;m<slopes.n_rows;m++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp: In function ‘double LikePLLHTrt(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, double)’:
BayesReversePLLH.cpp:135:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
135 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘double LikePLLHCOV(arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, arma::vec)’:
BayesReversePLLH.cpp:196:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
196 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘double ApproxMean(arma::vec, arma::vec, arma::vec, int)’:
BayesReversePLLH.cpp:291:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
291 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘arma::vec SurvPLLH(arma::vec, arma::vec, arma::vec, int)’:
BayesReversePLLH.cpp:351:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
351 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp:345:10: warning: unused variable ‘mean’ [-Wunused-variable]
345 | double mean=0;
| ^~~~
BayesReversePLLH.cpp: In function ‘int SampleBirth(arma::vec, int)’:
BayesReversePLLH.cpp:424:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
424 | for(m=1;m<cumprob.n_rows;m++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:438:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
438 | for(m=1;m<cumprob.n_rows;m++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp: In function ‘Rcpp::List BayesPiecewiseLinearLogHazardTrt(arma::vec, arma::vec, arma::vec, double, int)’:
BayesReversePLLH.cpp:905:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
905 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:912:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
912 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:977:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
977 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:982:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
982 | for(j=(Spot+1);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1045:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1045 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:1048:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1048 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:513:10: warning: unused variable ‘PSpike’ [-Wunused-variable]
513 | double PSpike=PSlab/(1-PSlab);
| ^~~~~~
BayesReversePLLH.cpp:519:7: warning: unused variable ‘b’ [-Wunused-variable]
519 | int b=0;
| ^
BayesReversePLLH.cpp:520:7: warning: unused variable ‘k’ [-Wunused-variable]
520 | int k=0;
| ^
BayesReversePLLH.cpp:567:7: warning: unused variable ‘which1’ [-Wunused-variable]
567 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:572:10: warning: unused variable ‘mean2’ [-Wunused-variable]
572 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:578:10: warning: unused variable ‘mean1’ [-Wunused-variable]
578 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:579:10: warning: unused variable ‘Con’ [-Wunused-variable]
579 | double Con=0;
| ^~~
BayesReversePLLH.cpp:638:10: warning: unused variable ‘bprop’ [-Wunused-variable]
638 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:639:10: warning: unused variable ‘Intb’ [-Wunused-variable]
639 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:640:10: warning: unused variable ‘Numb’ [-Wunused-variable]
640 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:644:10: warning: unused variable ‘prob1’ [-Wunused-variable]
644 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:645:10: warning: unused variable ‘med2’ [-Wunused-variable]
645 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function ‘double LikePEHTrt(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, double)’:
BayesReversePLLH.cpp:1125:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1125 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘double LikePEHCOV(arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, arma::vec)’:
BayesReversePLLH.cpp:1168:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1168 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘Rcpp::List BayesPiecewiseHazardTrt(arma::vec, arma::vec, arma::vec, double, int)’:
BayesReversePLLH.cpp:1539:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1539 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:1546:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1546 | for(j=(Spot+2);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1636:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1636 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1648:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
1648 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:1748:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1748 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:1752:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1752 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1238:7: warning: unused variable ‘b’ [-Wunused-variable]
1238 | int b=0;
| ^
BayesReversePLLH.cpp:1246:10: warning: unused variable ‘beta’ [-Wunused-variable]
1246 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:1272:10: warning: unused variable ‘betaprop’ [-Wunused-variable]
1272 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:1275:10: warning: unused variable ‘svar’ [-Wunused-variable]
1275 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:1276:10: warning: unused variable ‘Ints’ [-Wunused-variable]
1276 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:1277:10: warning: unused variable ‘Nums’ [-Wunused-variable]
1277 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:1281:10: warning: unused variable ‘mean1’ [-Wunused-variable]
1281 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:1282:10: warning: unused variable ‘Con’ [-Wunused-variable]
1282 | double Con=0;
| ^~~
BayesReversePLLH.cpp:1303:7: warning: unused variable ‘which1’ [-Wunused-variable]
1303 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:1308:10: warning: unused variable ‘bprop’ [-Wunused-variable]
1308 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:1309:10: warning: unused variable ‘Intb’ [-Wunused-variable]
1309 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:1310:10: warning: unused variable ‘Numb’ [-Wunused-variable]
1310 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:1314:10: warning: unused variable ‘prob1’ [-Wunused-variable]
1314 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:1315:10: warning: unused variable ‘med2’ [-Wunused-variable]
1315 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function ‘Rcpp::List BayesPiecewiseHazardCOV(arma::vec, arma::vec, arma::mat, double, int)’:
BayesReversePLLH.cpp:1997:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
1997 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2034:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2034 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2195:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2195 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2202:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2202 | for(j=(Spot+2);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2292:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2292 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2304:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2304 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2382:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2382 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2409:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2409 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:2413:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2413 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2419:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2419 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:1880:7: warning: unused variable ‘b’ [-Wunused-variable]
1880 | int b=0;
| ^
BayesReversePLLH.cpp:1881:7: warning: unused variable ‘k’ [-Wunused-variable]
1881 | int k=0;
| ^
BayesReversePLLH.cpp:1888:10: warning: unused variable ‘beta’ [-Wunused-variable]
1888 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:1914:10: warning: unused variable ‘betaprop’ [-Wunused-variable]
1914 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:1917:10: warning: unused variable ‘svar’ [-Wunused-variable]
1917 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:1918:10: warning: unused variable ‘Ints’ [-Wunused-variable]
1918 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:1919:10: warning: unused variable ‘Nums’ [-Wunused-variable]
1919 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:1921:10: warning: unused variable ‘mean2’ [-Wunused-variable]
1921 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:1923:10: warning: unused variable ‘mean1’ [-Wunused-variable]
1923 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:1924:10: warning: unused variable ‘Con’ [-Wunused-variable]
1924 | double Con=0;
| ^~~
BayesReversePLLH.cpp:1945:7: warning: unused variable ‘which1’ [-Wunused-variable]
1945 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:1950:10: warning: unused variable ‘bprop’ [-Wunused-variable]
1950 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:1951:10: warning: unused variable ‘Intb’ [-Wunused-variable]
1951 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:1952:10: warning: unused variable ‘Numb’ [-Wunused-variable]
1952 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:1956:10: warning: unused variable ‘prob1’ [-Wunused-variable]
1956 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:1957:10: warning: unused variable ‘med2’ [-Wunused-variable]
1957 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function ‘Rcpp::List BayesPiecewiseLinearLogHazardCOV(arma::vec, arma::vec, arma::mat, double, int)’:
BayesReversePLLH.cpp:2613:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2613 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2652:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2652 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2835:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2835 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2842:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2842 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2907:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2907 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2912:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2912 | for(j=(Spot+1);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2948:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2948 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2976:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2976 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:2980:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2980 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2986:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
2986 | for(j=0;j<COV.n_cols;j++){
| ~^~~~~~~~~~~
BayesReversePLLH.cpp:2490:7: warning: unused variable ‘b’ [-Wunused-variable]
2490 | int b=0;
| ^
BayesReversePLLH.cpp:2491:7: warning: unused variable ‘k’ [-Wunused-variable]
2491 | int k=0;
| ^
BayesReversePLLH.cpp:2498:10: warning: unused variable ‘beta’ [-Wunused-variable]
2498 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:2524:10: warning: unused variable ‘betaprop’ [-Wunused-variable]
2524 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:2527:10: warning: unused variable ‘svar’ [-Wunused-variable]
2527 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:2528:10: warning: unused variable ‘Ints’ [-Wunused-variable]
2528 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:2529:10: warning: unused variable ‘Nums’ [-Wunused-variable]
2529 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:2531:10: warning: unused variable ‘mean2’ [-Wunused-variable]
2531 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:2533:10: warning: unused variable ‘mean1’ [-Wunused-variable]
2533 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:2534:10: warning: unused variable ‘Con’ [-Wunused-variable]
2534 | double Con=0;
| ^~~
BayesReversePLLH.cpp:2555:7: warning: unused variable ‘which1’ [-Wunused-variable]
2555 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:2560:10: warning: unused variable ‘bprop’ [-Wunused-variable]
2560 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:2561:10: warning: unused variable ‘Intb’ [-Wunused-variable]
2561 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:2562:10: warning: unused variable ‘Numb’ [-Wunused-variable]
2562 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:2566:10: warning: unused variable ‘prob1’ [-Wunused-variable]
2566 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:2567:10: warning: unused variable ‘med2’ [-Wunused-variable]
2567 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function ‘double LikePEH(arma::vec, arma::vec, arma::vec, arma::vec, int)’:
BayesReversePLLH.cpp:3025:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
3025 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘Rcpp::List BayesPiecewiseHazard(arma::vec, arma::vec, double, int)’:
BayesReversePLLH.cpp:3337:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3337 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:3344:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3344 | for(j=(Spot+2);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3434:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3434 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3446:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
3446 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:3525:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
3525 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:3529:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
3529 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3092:7: warning: unused variable ‘b’ [-Wunused-variable]
3092 | int b=0;
| ^
BayesReversePLLH.cpp:3100:10: warning: unused variable ‘beta’ [-Wunused-variable]
3100 | double beta = 1 ;
| ^~~~
BayesReversePLLH.cpp:3122:10: warning: unused variable ‘betaprop’ [-Wunused-variable]
3122 | double betaprop=0;
| ^~~~~~~~
BayesReversePLLH.cpp:3125:10: warning: unused variable ‘svar’ [-Wunused-variable]
3125 | double svar=1;
| ^~~~
BayesReversePLLH.cpp:3126:10: warning: unused variable ‘Ints’ [-Wunused-variable]
3126 | double Ints=1;
| ^~~~
BayesReversePLLH.cpp:3127:10: warning: unused variable ‘Nums’ [-Wunused-variable]
3127 | double Nums=2;
| ^~~~
BayesReversePLLH.cpp:3131:10: warning: unused variable ‘mean1’ [-Wunused-variable]
3131 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:3132:10: warning: unused variable ‘Con’ [-Wunused-variable]
3132 | double Con=0;
| ^~~
BayesReversePLLH.cpp:3153:7: warning: unused variable ‘which1’ [-Wunused-variable]
3153 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:3158:10: warning: unused variable ‘bprop’ [-Wunused-variable]
3158 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:3159:10: warning: unused variable ‘Intb’ [-Wunused-variable]
3159 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:3160:10: warning: unused variable ‘Numb’ [-Wunused-variable]
3160 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:3164:10: warning: unused variable ‘prob1’ [-Wunused-variable]
3164 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:3165:10: warning: unused variable ‘med2’ [-Wunused-variable]
3165 | double med2=0;
| ^~~~
BayesReversePLLH.cpp: In function ‘double LikePLLH(arma::vec, arma::vec, arma::vec, arma::vec, int)’:
BayesReversePLLH.cpp:3609:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
3609 | for(m=0; m<Y.n_rows;m++){
| ~^~~~~~~~~
BayesReversePLLH.cpp: In function ‘Rcpp::List BayesPiecewiseLinearLogHazard(arma::vec, arma::vec, double, int)’:
BayesReversePLLH.cpp:4031:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
4031 | for(j=Spot;j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:4038:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
4038 | for(j=Spot; j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:4103:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
4103 | for(j=(Spot+1);j<(s.n_rows-1);j++){
| ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:4108:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
4108 | for(j=(Spot+1);j<(lam.n_rows-1);j++){
| ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:4152:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4152 | for(j=0;j<sstore.n_cols;j++){
| ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:4155:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
4155 | for(j=0;j<lamstore.n_cols;j++){
| ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3680:10: warning: unused variable ‘PSpike’ [-Wunused-variable]
3680 | double PSpike=PSlab/(1-PSlab);
| ^~~~~~
BayesReversePLLH.cpp:3686:7: warning: unused variable ‘b’ [-Wunused-variable]
3686 | int b=0;
| ^
BayesReversePLLH.cpp:3687:7: warning: unused variable ‘k’ [-Wunused-variable]
3687 | int k=0;
| ^
BayesReversePLLH.cpp:3727:7: warning: unused variable ‘which1’ [-Wunused-variable]
3727 | int which1=0;
| ^~~~~~
BayesReversePLLH.cpp:3732:10: warning: unused variable ‘mean2’ [-Wunused-variable]
3732 | double mean2=0;
| ^~~~~
BayesReversePLLH.cpp:3738:10: warning: unused variable ‘mean1’ [-Wunused-variable]
3738 | double mean1=0;
| ^~~~~
BayesReversePLLH.cpp:3739:10: warning: unused variable ‘Con’ [-Wunused-variable]
3739 | double Con=0;
| ^~~
BayesReversePLLH.cpp:3798:10: warning: unused variable ‘bprop’ [-Wunused-variable]
3798 | double bprop=1;
| ^~~~~
BayesReversePLLH.cpp:3799:10: warning: unused variable ‘Intb’ [-Wunused-variable]
3799 | double Intb=1;
| ^~~~
BayesReversePLLH.cpp:3800:10: warning: unused variable ‘Numb’ [-Wunused-variable]
3800 | double Numb=2;
| ^~~~
BayesReversePLLH.cpp:3804:10: warning: unused variable ‘prob1’ [-Wunused-variable]
3804 | double prob1=0;
| ^~~~~
BayesReversePLLH.cpp:3805:10: warning: unused variable ‘med2’ [-Wunused-variable]
3805 | double med2=0;
| ^~~~
g++-13 -std=gnu++11 -I"/home/hornik/tmp/R.check/r-patched-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++11 -shared -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -Wl,-O1 -o BayesReversePLLH.so BayesReversePLLH.o RcppExports.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-patched-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp2Ul6sc/R.INSTALL282be66f94399d/BayesReversePLLH/src'
make[1]: Entering directory '/tmp/Rtmp2Ul6sc/R.INSTALL282be66f94399d/BayesReversePLLH/src'
make[1]: Leaving directory '/tmp/Rtmp2Ul6sc/R.INSTALL282be66f94399d/BayesReversePLLH/src'
installing to /home/hornik/tmp/R.check/r-patched-gcc/Work/build/Packages/00LOCK-BayesReversePLLH/00new/BayesReversePLLH/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package ‘BayesReversePLLH’
finding HTML links ... done
ApproxMean html
BayesPiecewiseHazard html
BayesPiecewiseHazardCOV html
BayesPiecewiseHazardTrt html
BayesPiecewiseLinearLogHazard html
BayesPiecewiseLinearLogHazardCOV html
BayesPiecewiseLinearLogHazardTrt html
GetALLHazLogSlope html
GetALLHazPiece html
GetALLSurvPEH html
GetALLSurvPLLH html
PostMeanHazLogSlope html
PostMeanHazPiece html
PostMeanSurvPEH html
PostMeanSurvPLLH html
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BayesReversePLLH)